Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006284.1 Hibiscus syriacus cultivar Beakdansim tig00014998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108402

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1545--1578
11
3.1
11
86
0
50
44
8
20
26
1.81
7191--7237
23
2.1
22
88
4
67
10
10
36
42
1.74
8231--8269
2
21.0
2
85
15
57
51
0
0
48
1.00
10073--10539
124
3.8
122
80
5
478
25
18
20
35
1.95
16056--17622
782
2.0
783
98
0
3064
26
22
13
37
1.91
18951--18982
16
2.0
16
93
0
55
34
6
25
34
1.81
20788--20830
21
2.0
21
82
8
52
37
23
20
18
1.94
32716--32754
3
13.0
3
88
0
60
33
2
2
61
1.23
32885--32939
3
17.7
3
81
10
58
27
0
1
70
0.97
32889--32971
12
6.9
11
76
15
60
22
4
1
71
1.12
33042--33077
18
2.1
17
89
5
54
16
5
0
77
0.94
37905--37983
40
2.0
40
94
0
140
24
17
35
22
1.95
39672--39718
22
2.1
23
88
4
69
2
14
4
78
0.99
39707--39771
16
4.1
16
75
15
71
3
16
3
76
1.03
41031--41070
21
2.0
20
85
5
53
47
15
20
17
1.83
50846--50875
13
2.4
13
94
5
53
73
6
0
20
1.05
51816--51846
16
1.9
16
93
0
53
22
25
29
22
1.99
52134--52387
90
2.7
93
84
5
336
27
17
16
38
1.92
56258--56287
15
2.0
15
100
0
60
40
20
6
33
1.78
66542--66594
26
2.0
26
85
7
72
1
18
9
69
1.25
82008--82095
24
3.7
24
87
3
124
22
18
21
37
1.94
82008--82105
24
4.1
24
84
10
110
23
16
21
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84182--84273
18
5.2
18
74
16
86
17
44
20
17
1.87
84236--84267
13
2.5
13
94
0
55
15
43
25
15
1.86
86738--86819
24
3.4
24
89
3
121
24
18
20
36
1.95
88623--88750
2
68.0
2
75
11
119
49
0
0
50
1.00
90968--91008
18
2.3
18
87
4
57
58
0
0
41
0.98
98153--98187
17
2.1
17
100
0
70
28
22
11
37
1.89
99735--99768
17
2.1
16
88
5
50
76
0
8
14
1.01

Tables:   1

The End!