genome.fa.s6287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006287.1 Hibiscus syriacus cultivar Beakdansim tig00015008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146420

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576--1619	2	22.0	2	100	0	88	50	0	0	50	1.00
1844--1889	20	2.2	20	84	3	56	54	6	4	34	1.46
24015--24059	18	2.5	18	100	0	90	35	26	6	31	1.82
26462--26503	2	21.0	2	100	0	84	50	0	0	50	1.00
26996--27043	20	2.4	20	85	0	60	33	27	10	29	1.90
27007--27045	20	2.0	20	94	0	69	30	28	12	28	1.93
27614--27751	57	2.4	57	87	2	197	28	15	22	33	1.94
28043--28076	16	2.1	16	100	0	68	44	26	11	17	1.83
29965--30063	21	4.8	20	72	6	72	36	23	19	21	1.95
30031--30223	20	9.6	20	82	5	228	35	26	19	18	1.95
30583--30650	32	2.2	32	94	2	120	10	23	20	45	1.81
30743--30853	14	6.2	18	68	25	76	46	19	22	10	1.81
30732--30807	21	3.7	21	77	8	84	46	18	23	11	1.82
30784--30863	33	2.4	33	93	0	133	47	22	21	8	1.78
30883--30937	14	3.6	14	77	17	65	9	25	23	41	1.83
30866--30958	32	2.8	32	91	4	141	10	23	21	44	1.84
32882--32975	33	2.8	33	91	0	152	48	26	17	7	1.73
32901--32959	14	3.9	14	74	20	55	49	27	16	6	1.71
32847--32975	52	2.4	54	76	19	146	47	27	16	8	1.75
32847--32975	19	7.3	19	76	17	134	47	27	16	8	1.75
32971--33142	19	9.6	19	74	16	152	11	20	23	45	1.83
32993--33049	14	3.7	14	75	20	51	10	22	22	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32976--33068	33	2.8	33	95	0	168	10	21	21	46	1.81
33040--33142	37	2.7	39	83	10	124	10	18	25	45	1.81
33593--33659	21	3.2	21	70	8	64	26	34	17	20	1.96
35059--35094	14	2.6	14	95	0	63	33	0	22	44	1.53
35201--35318	53	2.2	53	90	3	184	45	16	22	15	1.84
35308--35515	19	11.7	19	78	18	234	14	22	17	44	1.86
35314--35529	53	4.1	52	86	11	293	13	22	18	45	1.84
35308--35515	72	2.9	72	86	8	266	14	22	17	44	1.86
35383--35529	33	4.2	33	81	13	188	13	21	18	46	1.83
37806--37830	12	2.1	12	100	0	50	0	28	0	72	0.86
38005--38051	24	2.0	24	87	8	69	38	21	14	25	1.92
38743--38971	20	11.4	20	87	1	253	18	18	26	36	1.94
52275--52328	2	27.5	2	92	3	92	48	1	0	50	1.11
54241--54281	22	1.9	22	85	5	57	56	2	14	26	1.51
55133--55446	149	2.1	148	91	1	513	26	16	21	35	1.94
56422--56494	32	2.3	32	97	0	137	30	34	15	20	1.93
60404--60718	162	2.0	161	94	0	558	37	13	10	37	1.80
61465--61492	14	2.0	14	100	0	56	42	0	7	50	1.30
61973--62090	20	5.8	20	75	11	123	12	24	24	38	1.90
61977--62112	41	3.3	41	96	1	245	13	23	25	37	1.91
61999--62134	22	6.5	21	75	13	129	14	22	27	36	1.93
62234--62283	6	8.5	6	93	2	84	30	54	16	0	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62779--62806	6	4.7	6	100	0	56	0	32	50	17	1.47
62890--62953	19	3.2	19	70	12	65	40	21	18	18	1.91
62899--63276	41	9.2	41	90	2	305	37	23	20	18	1.94
62924--63311	82	4.7	81	88	3	487	37	23	19	19	1.94
62965--63311	41	8.5	41	92	1	545	37	23	20	19	1.94
63344--63449	20	5.2	20	67	12	63	35	25	19	18	1.95
63351--63453	41	2.5	41	92	3	163	37	25	19	17	1.93
63193--63489	142	2.1	143	91	3	492	34	22	21	21	1.97
65440--65512	38	1.9	38	86	5	103	41	8	12	38	1.73
65880--65971	42	2.2	42	90	0	139	22	15	14	47	1.81
66479--66568	27	3.5	26	70	21	73	46	0	3	50	1.18
66681--66714	14	2.4	14	90	0	50	44	14	2	38	1.61
66690--66721	14	2.3	15	89	10	50	56	12	0	31	1.37
71181--71252	31	2.4	30	77	9	74	38	8	20	31	1.83
77371--77468	49	2.0	50	82	6	119	42	15	17	24	1.87
78520--78549	13	2.3	13	100	0	60	66	0	0	33	0.92
80046--80083	10	3.9	10	89	3	60	65	0	13	21	1.26
80042--80083	15	2.9	15	92	3	68	66	0	11	21	1.23
80123--80186	32	2.0	33	87	3	94	53	4	0	42	1.22
80164--80414	39	7.0	34	73	16	136	44	8	4	42	1.55
80165--80358	71	2.8	67	79	12	196	43	8	4	43	1.54
80133--80358	33	6.6	34	73	18	141	44	7	3	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80405--80456	15	3.7	14	85	12	63	48	9	0	42	1.36
80405--80443	15	2.6	15	100	0	78	48	7	0	43	1.31
83242--83285	23	1.9	23	100	0	88	29	29	13	27	1.94
87650--87685	12	2.9	12	95	4	63	50	8	8	33	1.63
93084--93126	14	3.3	13	90	6	61	46	2	0	51	1.13
93092--93127	2	19.0	2	88	11	58	50	0	0	50	1.00
99987--100026	21	1.9	21	90	10	64	17	5	10	67	1.37
106021--106054	16	2.2	15	89	5	50	58	5	8	26	1.51
108982--109022	21	2.0	21	85	9	57	17	31	9	41	1.82
111485--111545	31	2.0	31	87	6	88	40	22	18	18	1.91
117475--117529	28	2.0	28	92	0	92	38	21	3	36	1.71
121632--121673	22	1.9	21	81	18	50	50	0	0	50	1.00
125791--125820	8	3.8	8	95	0	51	46	3	0	50	1.18
136129--136155	11	2.5	11	100	0	54	55	0	0	44	0.99
140149--140183	17	2.1	17	89	5	54	60	14	8	17	1.58
141144--141172	15	1.9	15	100	0	58	55	0	6	37	1.27
141161--141741	253	2.3	248	86	6	799	26	11	19	41	1.86
142425--142952	261	2.0	258	87	7	750	40	19	11	27	1.86
143518--143558	22	1.9	21	90	5	64	39	4	0	56	1.21
143507--143531	2	12.5	2	100	0	50	48	0	0	52	1.00
144189--144252	2	33.5	2	87	9	98	46	1	0	51	1.10
144238--144311	36	2.1	36	82	5	87	44	4	6	44	1.49

Tables:   1

The End!