genome.fa.s6288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006288.1 Hibiscus syriacus cultivar Beakdansim tig00015009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115756

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209--251	12	3.8	12	81	12	63	46	18	16	18	1.84
209--251	22	2.0	22	95	0	77	46	18	16	18	1.84
1021--1117	31	3.1	31	78	8	99	34	22	16	26	1.95
7024--7060	14	2.6	14	95	0	65	0	59	21	18	1.38
7340--7380	18	2.3	18	87	4	57	26	4	2	65	1.25
7474--7595	53	2.5	48	85	13	155	36	1	12	49	1.50
7499--7582	26	3.2	26	66	21	75	39	2	11	46	1.54
9567--9638	26	3.0	24	68	27	62	26	6	4	62	1.39
13016--13049	12	2.8	12	86	0	50	70	5	0	23	1.09
13311--13425	51	2.3	51	89	3	169	23	28	33	14	1.94
16382--16631	39	6.4	39	87	0	331	45	7	36	11	1.67
16872--16969	39	2.5	39	76	12	103	45	7	28	18	1.75
21017--21249	71	3.3	71	75	19	216	45	4	7	42	1.53
21020--21166	36	4.1	36	80	7	163	44	4	8	42	1.55
21036--21266	72	3.2	74	78	14	232	45	5	6	41	1.53
21012--21350	34	9.5	35	70	19	172	45	4	6	43	1.50
21082--21363	104	2.7	106	76	10	267	46	4	6	42	1.47
21382--21419	15	2.6	15	83	4	51	21	2	0	76	0.91
26995--27918	165	5.6	165	87	3	1051	28	26	21	23	1.99
26995--27918	249	3.7	248	88	2	1157	28	26	21	23	1.99
27012--27918	414	2.2	414	93	0	1528	28	26	21	23	1.99
28414--28439	13	2.0	13	100	0	52	23	30	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28522--28754	71	3.3	70	75	19	205	45	4	7	42	1.53
28525--28671	36	4.1	36	80	7	163	44	4	8	42	1.55
28648--28788	34	3.9	35	72	14	110	50	4	5	39	1.48
28647--28780	38	3.6	38	74	20	124	50	5	5	38	1.47
28587--28856	105	2.6	103	77	11	264	47	4	5	42	1.48
28865--28919	23	2.4	23	81	6	67	27	1	0	70	0.97
28864--28925	15	4.1	15	76	14	56	25	3	0	70	1.02
30830--30864	2	17.5	2	100	0	70	48	0	0	51	1.00
40300--40346	13	3.4	14	82	14	62	42	6	25	25	1.78
43195--43255	21	2.9	21	80	0	68	27	16	24	31	1.96
47432--48105	56	12.3	55	82	6	617	28	23	16	31	1.96
47683--47822	55	2.6	53	84	6	167	30	24	15	30	1.95
47462--48107	111	5.9	108	76	11	401	28	23	16	31	1.96
47432--48105	219	3.1	217	76	11	676	28	23	16	31	1.96
47840--48107	107	2.4	107	86	3	320	26	22	17	33	1.96
48456--48641	37	5.1	37	84	3	243	25	18	20	34	1.96
48502--48637	73	1.9	73	96	0	254	25	20	19	34	1.96
51424--51458	10	3.4	10	84	7	52	2	11	0	85	0.69
51426--51464	18	2.2	18	86	9	53	2	15	0	82	0.79
53668--53699	4	8.0	4	100	0	64	50	0	25	25	1.50
53784--53826	6	7.2	6	87	7	61	51	16	13	18	1.77
53784--53826	19	2.4	18	88	7	61	51	16	13	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54067--54161	21	4.5	21	90	2	138	12	21	20	46	1.83
60335--60395	20	2.9	21	80	7	61	24	31	27	16	1.96
62022--62047	12	2.2	12	100	0	52	26	34	38	0	1.57
64169--64279	46	2.4	45	73	7	116	36	20	10	32	1.87
69475--69506	15	2.1	15	94	0	55	53	12	25	9	1.68
72950--72984	15	2.4	15	90	4	54	51	5	25	17	1.67
77995--78045	2	25.5	2	91	0	84	47	0	0	52	1.00
78046--78072	12	2.2	12	100	0	54	62	0	0	37	0.95
79393--79454	3	22.0	3	80	9	69	62	0	1	35	1.05
79993--80050	28	2.1	28	84	6	75	32	5	3	58	1.37
80534--80624	46	1.9	49	82	10	118	38	14	18	28	1.90
81449--81535	43	2.0	44	86	2	122	31	11	24	33	1.91
81610--81650	7	6.0	7	89	10	59	14	17	12	56	1.68
88781--88855	22	3.4	22	92	0	123	36	13	14	36	1.85
89510--89633	45	2.8	45	94	0	221	22	20	19	37	1.95
89630--90033	123	3.4	112	83	10	438	38	17	19	25	1.93
89743--90033	123	2.4	123	92	0	485	39	16	19	24	1.92
90417--90469	3	18.0	3	80	3	63	35	1	0	62	1.06
90429--90469	18	2.3	18	95	0	73	39	2	0	58	1.11
91810--91834	12	2.1	12	100	0	50	36	0	0	64	0.94
91825--91875	22	2.4	22	75	18	54	39	0	1	58	1.09
95185--95214	15	2.0	15	100	0	60	20	33	0	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101437--101470	18	1.9	18	88	5	52	61	0	0	38	0.96
105048--105073	2	13.0	2	100	0	52	50	0	0	50	1.00
105279--105347	2	36.5	2	88	11	110	50	0	0	49	1.00
105276--105347	29	2.4	30	90	6	119	51	0	0	48	1.00
105619--105667	2	24.5	2	100	0	98	48	0	0	51	1.00
107852--107897	14	3.2	14	75	6	56	63	2	0	34	1.07

Tables:   1

The End!