genome.fa.s6289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006289.1 Hibiscus syriacus cultivar Beakdansim tig00015010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86763

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5876--5957	20	4.0	22	77	13	86	25	18	26	29	1.98
5884--5957	22	3.7	20	77	10	71	24	18	28	28	1.98
11245--11277	16	2.1	16	94	0	57	60	24	9	6	1.49
11352--11410	16	3.7	16	86	0	82	61	18	8	11	1.55
11349--11410	32	1.9	32	96	0	115	61	17	8	12	1.55
12516--12569	14	4.1	14	81	18	80	50	27	14	7	1.70
12507--12568	24	2.6	24	94	0	106	51	25	14	8	1.69
12507--12594	24	3.6	25	84	6	103	50	23	15	10	1.75
12516--12594	38	2.1	38	83	4	97	49	25	15	10	1.75
15094--15143	12	4.3	12	77	10	59	20	20	20	40	1.92
15101--15144	22	2.0	22	95	0	79	20	20	18	40	1.91
15949--16014	15	4.4	15	88	0	105	37	6	18	37	1.75
15949--16030	30	2.8	30	88	1	112	39	6	18	36	1.75
15944--16030	15	5.9	15	80	2	95	41	5	18	34	1.74
16012--16082	20	3.6	20	94	1	126	40	8	14	36	1.76
16248--16404	30	5.6	27	69	19	99	50	1	1	47	1.17
16358--16397	16	2.6	16	84	4	55	55	0	0	45	0.99
16248--16404	25	6.1	25	70	20	85	50	1	1	47	1.17
16372--16414	21	2.0	22	86	4	61	51	0	0	48	1.00
16601--16720	42	2.9	42	97	0	222	44	18	20	16	1.87
33652--33705	25	2.2	25	83	3	65	37	3	9	50	1.52
34467--34518	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34507--34560	20	2.7	20	94	0	90	33	24	16	25	1.96
34582--34621	20	2.0	20	95	0	71	20	30	17	32	1.95
35175--35216	19	2.2	19	86	0	57	50	28	16	4	1.66
35220--35395	19	9.7	19	73	14	138	13	22	19	45	1.84
35283--35370	33	2.6	33	90	1	140	12	26	21	39	1.89
35338--35395	20	2.9	20	75	10	55	13	22	18	44	1.85
37135--37223	30	3.0	30	90	1	126	31	25	21	21	1.98
37219--37286	31	2.2	31	81	5	84	33	17	19	29	1.95
38011--38055	21	2.1	21	83	0	54	13	24	31	31	1.93
41283--41371	30	3.0	30	91	1	135	31	26	21	20	1.98
42155--42199	21	2.1	21	83	0	54	13	24	31	31	1.93
42794--42852	29	2.0	29	100	0	118	44	20	3	32	1.68
45443--45531	30	3.0	30	91	1	135	31	26	21	20	1.98
49575--49610	14	2.6	14	95	0	63	30	0	25	44	1.54
49736--49792	14	3.7	14	70	20	51	43	21	24	10	1.83
49718--49807	33	2.7	33	91	0	135	43	18	22	15	1.88
49718--49776	19	3.4	18	71	22	54	45	18	22	13	1.84
49803--49856	19	2.8	19	82	2	63	16	20	24	38	1.92
52125--52149	12	2.1	12	100	0	50	0	28	0	72	0.86
53122--53172	20	2.5	20	96	0	93	31	19	29	19	1.97
53385--53435	20	2.5	20	100	0	102	33	27	23	15	1.95
53461--53544	19	4.7	19	90	10	133	14	21	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53461--53557	38	2.8	33	84	14	140	13	22	18	45	1.84
53550--53588	20	2.0	20	94	0	69	12	10	30	46	1.75
53671--53707	14	2.6	14	86	0	56	48	21	0	29	1.50
55577--55644	20	3.5	20	78	9	77	39	23	22	14	1.91
55633--55690	14	3.9	14	79	16	71	48	24	17	10	1.78
55617--55695	32	2.4	33	95	2	142	46	22	18	11	1.81
55725--55781	14	3.8	14	78	17	69	10	15	24	49	1.76
55707--55797	32	2.8	33	93	3	157	12	17	21	48	1.80
55782--55836	20	2.8	19	83	8	65	16	23	23	36	1.94
56320--56364	18	2.5	18	85	0	63	15	15	42	26	1.87
57684--57742	20	3.0	20	87	0	73	42	22	18	16	1.89
58216--58353	61	2.3	61	88	0	213	23	18	23	34	1.96
58216--58350	20	6.7	20	81	7	139	24	18	23	33	1.97
58216--58371	61	2.6	61	84	2	170	23	19	23	33	1.97
58421--58461	21	2.0	21	85	0	55	34	31	17	17	1.93
58468--58513	19	2.3	20	81	7	58	21	17	32	28	1.96
63528--63642	57	2.0	57	84	6	151	38	6	19	35	1.78
63717--63802	23	3.8	24	81	9	90	23	22	24	30	1.99
63782--63838	24	2.4	24	85	2	80	24	24	19	31	1.98
63954--63987	2	17.0	2	100	0	68	50	0	0	50	1.00
67610--67643	5	6.8	5	89	0	50	2	41	35	20	1.68
68026--68056	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77114--77152	17	2.3	17	100	0	78	48	10	15	25	1.76
81917--81974	29	2.0	29	89	0	89	15	36	25	22	1.94
82019--82101	14	6.2	14	75	23	65	25	37	28	8	1.85
82031--82082	18	2.8	18	88	5	77	25	38	26	9	1.86
82031--82082	10	5.4	10	78	17	65	25	38	26	9	1.86
82083--82167	33	2.6	33	87	7	111	27	27	37	8	1.85
82171--82226	29	1.9	29	92	0	94	19	28	37	14	1.91
83599--83663	29	2.2	30	83	10	80	35	0	1	63	1.04

Tables:   1

The End!