genome.fa.s6290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006290.1 Hibiscus syriacus cultivar Beakdansim tig00015016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51998

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171--195	12	2.1	12	100	0	50	8	32	44	16	1.76
12246--12309	11	5.7	11	80	12	60	81	0	12	6	0.87
12256--12308	16	3.2	16	78	19	56	83	0	13	3	0.79
13638--13900	82	3.2	81	82	4	305	35	20	18	25	1.95
13680--13968	82	3.5	81	78	5	287	37	18	20	23	1.94
18365--18466	21	4.8	21	92	3	145	45	20	17	16	1.86
22863--22945	25	3.3	25	80	8	89	74	0	20	4	0.99
22877--22922	16	2.8	16	87	12	67	78	0	21	0	0.76
22861--22923	21	3.0	20	80	15	74	74	0	23	1	0.90
22884--22963	16	4.8	16	73	14	54	77	0	16	6	0.96
25090--25195	37	2.9	36	84	6	133	34	21	18	24	1.96
25085--25195	36	3.1	35	84	6	132	35	21	18	25	1.95
25315--25416	42	2.5	41	80	1	114	26	21	20	31	1.98
25266--25670	201	2.0	200	92	0	675	33	16	20	30	1.94
25729--25919	42	4.6	42	78	1	206	27	21	21	29	1.98
25467--25859	213	1.8	212	91	0	642	32	16	20	30	1.95
25729--25919	83	2.3	83	94	0	337	27	21	21	29	1.98
25516--26126	296	2.1	296	94	0	1078	31	17	20	30	1.96
26025--26137	42	2.7	42	77	2	111	24	23	22	30	1.99
25812--26235	213	2.0	213	94	0	740	33	15	20	30	1.94
32232--32335	31	3.4	31	97	0	190	42	23	17	17	1.89
37377--37745	194	1.9	194	81	5	451	38	12	16	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39191--39497	159	1.9	156	89	4	474	38	14	10	36	1.81
39347--40154	225	3.6	225	82	5	915	34	13	12	38	1.83
39783--40101	118	2.8	111	75	9	292	33	13	12	39	1.83
40283--40318	16	2.2	17	90	5	56	36	25	0	38	1.56
41762--41883	52	2.3	55	78	10	157	33	21	18	26	1.96
43844--44019	31	5.7	30	78	9	140	30	28	26	14	1.95
43839--44019	92	2.0	92	82	6	224	29	28	25	15	1.96
43854--44019	62	2.7	61	84	8	194	30	29	25	14	1.95
46042--46118	39	2.0	39	86	0	109	11	35	33	19	1.88
50386--50434	17	2.8	17	87	6	62	16	20	14	48	1.80

Tables:   1

The End!