genome.fa.s6291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006291.1 Hibiscus syriacus cultivar Beakdansim tig00015027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145327

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9199--9276	22	3.5	22	91	0	129	14	23	30	32	1.94
13413--13450	19	1.9	19	89	5	58	26	28	2	42	1.69
17028--17090	21	3.0	21	81	4	74	30	11	6	52	1.61
19938--20116	79	2.3	78	85	1	232	35	26	15	22	1.93
20771--20959	31	6.0	30	77	18	140	40	0	4	55	1.20
20791--20968	38	4.9	36	76	19	156	39	0	4	55	1.25
20772--20953	50	3.6	51	81	13	186	40	0	4	54	1.20
27436--27513	22	3.5	22	92	0	129	14	23	30	32	1.94
31672--31709	19	1.9	19	89	5	58	26	28	2	42	1.69
35407--35469	21	3.0	21	81	4	74	30	11	6	52	1.61
38309--38487	79	2.3	78	85	1	232	35	26	15	22	1.93
39151--39354	2	109.5	2	73	25	173	41	0	3	54	1.19
39151--39354	71	3.0	70	84	12	248	41	0	3	54	1.19
39151--39369	121	1.8	122	83	10	297	40	0	4	54	1.24
45890--45967	22	3.5	22	87	0	120	15	23	29	32	1.95
50122--50159	19	1.9	19	89	5	58	28	28	0	42	1.56
53852--53914	21	3.0	21	81	4	74	30	11	6	52	1.61
56754--56932	79	2.3	78	83	3	216	36	26	15	21	1.93
57588--57881	7	39.6	7	74	19	201	39	1	6	53	1.33
57589--57802	2	112.5	2	72	25	164	41	0	4	53	1.25
57590--57875	94	3.2	88	73	20	152	40	1	6	52	1.34
57588--57802	37	6.3	34	79	17	159	41	0	4	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57761--57890	67	2.0	65	80	13	149	36	2	7	53	1.43
58200--58242	6	7.2	6	89	0	68	18	13	65	2	1.38
58196--58242	18	2.6	18	89	0	76	21	14	61	2	1.43
65536--65561	12	2.2	12	100	0	52	7	0	7	84	0.77
65527--65578	19	2.7	19	82	11	61	13	1	7	76	1.07
66497--66538	12	3.6	12	80	6	59	45	4	2	47	1.36
66496--66550	23	2.4	23	96	0	101	43	3	3	49	1.37
66497--66558	11	5.5	11	79	7	54	43	3	1	51	1.27
66722--67239	254	2.0	256	92	4	862	33	20	10	35	1.87
70678--70851	60	2.9	61	76	5	174	36	14	13	36	1.85
71339--71410	28	2.5	29	86	6	103	44	5	5	44	1.50
75686--75725	21	1.9	21	90	10	64	12	32	35	20	1.90
76238--76315	22	3.5	22	87	0	120	14	23	32	30	1.94
80478--80515	19	1.9	19	89	5	58	28	28	0	42	1.56
84213--84275	21	3.0	21	77	13	67	31	9	6	52	1.59
87123--87301	79	2.3	79	81	1	207	35	26	15	22	1.94
87958--88183	2	120.5	2	70	27	160	41	0	4	53	1.24
87958--88183	5	40.2	6	73	24	160	41	0	4	53	1.24
87981--88261	30	8.9	32	70	22	111	39	1	5	54	1.30
94069--94109	21	2.0	21	90	9	66	17	31	29	21	1.96
94622--94700	22	3.5	22	87	1	113	13	21	30	34	1.92
102594--102646	21	2.5	21	87	3	70	32	11	5	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105464--105642	79	2.3	78	84	1	223	35	27	15	21	1.93
106299--106510	2	111.5	2	74	22	192	42	0	4	53	1.20
106299--106586	12	26.1	11	72	19	187	40	0	5	52	1.31
106293--106510	106	2.1	105	83	8	273	41	0	4	53	1.21
106318--106510	56	3.4	55	79	19	213	42	0	3	53	1.18
106944--106971	13	2.2	13	100	0	56	25	42	14	17	1.87
114153--114212	19	3.2	18	79	13	59	15	1	8	75	1.12
114153--114213	10	6.4	10	71	21	51	14	1	8	75	1.11
115132--115173	12	3.6	12	80	6	59	45	4	2	47	1.36
115131--115185	23	2.4	23	96	0	101	43	3	3	49	1.37
115141--115184	11	3.9	11	79	5	52	40	4	2	52	1.34
115359--115875	253	2.0	256	93	3	896	33	20	10	35	1.87
119311--119476	61	2.8	60	76	5	174	35	14	13	36	1.85
119311--119484	60	2.9	61	76	5	174	35	14	13	36	1.85
119970--120041	28	2.5	29	86	6	103	44	5	5	44	1.50
121352--121524	81	2.1	81	94	2	303	32	19	20	27	1.97
121360--121488	40	3.2	40	65	12	102	31	22	19	27	1.98
125542--125578	20	1.9	19	89	10	58	37	24	2	35	1.70
126248--126298	21	2.3	23	83	12	72	31	25	13	29	1.94
129802--129853	21	2.4	22	84	9	63	30	26	15	26	1.96
136952--136997	20	2.2	22	88	7	69	34	8	4	52	1.52

Tables:   1

The End!