Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006292.1 Hibiscus syriacus cultivar Beakdansim tig00015033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74885
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:7007 original size:41 final size:44
Alignment explanation
Indices: 6962--7063 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 44
6952 AGCCCCCCAT
* *
6962 TTTTTCATCTTTATAATT-AGGTCTTTAAT-TT-TTAAATCTTA-
1 TTTTTCATCTTTATAATTGAGGTC-CTAATATTATTAAATCTAAC
* *
7003 TTTTTCACCTTTATAATTGAGGTCCTAATATTATTCAATCTAAC
1 TTTTTCATCTTTATAATTGAGGTCCTAATATTATTAAATCTAAC
7047 TTTTT-ATCTTTATAATT
1 TTTTTCATCTTTATAATT
7064 TAAATCTCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
41 21 0.40
42 7 0.13
43 19 0.37
44 5 0.10
ACGTcount: A:0.27, C:0.13, G:0.05, T:0.55
Consensus pattern (44 bp):
TTTTTCATCTTTATAATTGAGGTCCTAATATTATTAAATCTAAC
Found at i:7083 original size:43 final size:43
Alignment explanation
Indices: 6962--7104 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
6952 AGCCCCCCAT
* * *
6962 TTTTTCATCTTTATAA-TTAGGTCTTTAA-TTTTTAAATCTTA
1 TTTTTCATCTTTATAATTTAGGTCTCTAATTTTTTCAATCTAA
* * *
7003 TTTTTCACCTTTATAATTGAGGTC-CTAATATTATTCAATCTAA
1 TTTTTCATCTTTATAATTTAGGTCTCTAAT-TTTTTCAATCTAA
** **
7046 CTTTTT-ATCTTTATAATTTAAATCTCTAATTTTTTCAATC-CC
1 -TTTTTCATCTTTATAATTTAGGTCTCTAATTTTTTCAATCTAA
*
7088 TTTTTCACCTTTATAAT
1 TTTTTCATCTTTATAAT
7105 CGATGCCCCT
Statistics
Matches: 82, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 23 0.28
42 16 0.20
43 33 0.40
44 10 0.12
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.54
Consensus pattern (43 bp):
TTTTTCATCTTTATAATTTAGGTCTCTAATTTTTTCAATCTAA
Found at i:7342 original size:45 final size:44
Alignment explanation
Indices: 7115--7343 Score: 189
Period size: 45 Copynumber: 5.1 Consensus size: 44
7105 CGATGCCCCT
* **
7115 AATTTTGTAATCTCACTTT-TAACTTTATAATTGAGGCTTTTGAA
1 AATTTTTTAATCTCACTTTCTAACTTTATAATTGAGGCCCTT-AA
** * * *
7159 TTTTTTTTTCAAACTCACTTTCTACCTTT-TCAATTAAGGCCCTTAA
1 -AATTTTTT-AATCTCACTTTCTAACTTTAT-AATTGAGGCCCTTAA
* * * * *
7205 ATTTTTTTCAATCTTAATTTCTACCTTTATAATTGA-GACCTCT--
1 AATTTTTT-AATCTCACTTTCTAACTTTATAATTGAGGCCCT-TAA
* * *
7248 AATATTTTAATCTCACTTTCTTAGCTTTATAATTGAGACCCTTAA
1 AATTTTTTAATCTCACTTTC-TAACTTTATAATTGAGGCCCTTAA
* *
7293 AATTTTTTAATCTCACTTTCTAACTTTCTAATTGAGGCCCCTAA
1 AATTTTTTAATCTCACTTTCTAACTTTATAATTGAGGCCCTTAA
7337 GAATTTT
1 -AATTTT
7344 CGATCTCAAT
Statistics
Matches: 148, Mismatches: 26, Indels: 20
0.76 0.13 0.10
Matches are distributed among these distances:
42 10 0.07
43 21 0.14
44 27 0.18
45 60 0.41
46 14 0.09
47 16 0.11
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (44 bp):
AATTTTTTAATCTCACTTTCTAACTTTATAATTGAGGCCCTTAA
Found at i:7350 original size:44 final size:42
Alignment explanation
Indices: 7222--7371 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 42
7212 TCAATCTTAA
* * *
7222 TTTCTACCTTTATAATTGAGACCTCTAATATTTTAATCTCAC
1 TTTCTAACTTTATAATTGAGACCCCTAAAATTTTAATCTCAC
* *
7264 TTTCTTAGCTTTATAATTGAGACCCTTAAAATTTTTTAATCTCAC
1 TTTC-TAACTTTATAATTGAGACCCCTAAAA--TTTTAATCTCAC
* * *
7309 TTTCTAACTTTCTAATTGAGGCCCCTAAGAATTTTCGATCTCA-
1 TTTCTAACTTTATAATTGAGACCCCTAA-AATTTT-AATCTCAC
* * *
7352 ATTATACCTTTATAATTGAG
1 TTTCTAACTTTATAATTGAG
7372 TTCCTATTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 4 0.04
43 42 0.47
44 26 0.29
45 18 0.20
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (42 bp):
TTTCTAACTTTATAATTGAGACCCCTAAAATTTTAATCTCAC
Found at i:7428 original size:44 final size:44
Alignment explanation
Indices: 7005--7431 Score: 152
Period size: 45 Copynumber: 9.8 Consensus size: 44
6995 AAATCTTATT
* * * * *
7005 TTTC-ACCTTTATAATTGAGGTC-CTAATATTATTCAATCT-AA
1 TTTCTACCTTTATAATTAAAGCCTCTAATTTTTTTCAATCTCAA
* * * * **
7046 CTTTTTATCTTTATAATTTAAA-TCTCTAA-TTTTTTCAATCCCTT
1 -TTTCTACCTTTATAA-TTAAAGCCTCTAATTTTTTTCAATCTCAA
** * * * *
7090 TTTC-ACCTTTATAATCGATGCCCCTAA-TTTTGT-AATCTCAC
1 TTTCTACCTTTATAATTAAAGCCTCTAATTTTTTTCAATCTCAA
* * * * * * *
7131 TTT-TAACTTTATAATTGAGGCTTTTGAATTTTTTTTTCAAACTCAC
1 TTTCTACCTTTATAATTAAAGCCTCT-AA--TTTTTTTCAATCTCAA
* *
7177 TTTCTACCTTT-TCAATTAAGGCC-CTTAAATTTTTTTCAATCTTAA
1 TTTCTACCTTTAT-AATTAAAGCCTC-T-AATTTTTTTCAATCTCAA
* * *
7222 TTTCTACCTTTATAATT-GAGACCTCTAA-TATTTT-AATCTCAC
1 TTTCTACCTTTATAATTAAAG-CCTCTAATTTTTTTCAATCTCAA
* * * * *
7264 TTTCTTAGCTTTATAATTGAGACCCT-TAAAATTTTTT-AATCTCAC
1 TTTC-TACCTTTATAATT-AAAGCCTCT-AATTTTTTTCAATCTCAA
* * * * * *** *
7309 TTTCTAACTTTCTAATTGAGGCCCCTAAGAATTTTCGATCTCAA
1 TTTCTACCTTTATAATTAAAGCCTCTAATTTTTTTCAATCTCAA
* * * **
7353 -TTATACCTTTATAATT-GAGTTCCTATTTTTTTTTTCAATCTCAA
1 TTTCTACCTTTATAATTAAAG--CCTCTAATTTTTTTCAATCTCAA
* *
7397 TTTCTATCTTTATAATTAAAGCCTCTATTTTTTTT
1 TTTCTACCTTTATAATTAAAGCCTCTAATTTTTTT
7432 TTACAATTTC
Statistics
Matches: 283, Mismatches: 74, Indels: 54
0.69 0.18 0.13
Matches are distributed among these distances:
41 25 0.09
42 35 0.12
43 62 0.22
44 60 0.21
45 69 0.24
46 15 0.05
47 17 0.06
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.49
Consensus pattern (44 bp):
TTTCTACCTTTATAATTAAAGCCTCTAATTTTTTTCAATCTCAA
Found at i:13394 original size:31 final size:30
Alignment explanation
Indices: 13295--13397 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 30
13285 TTATGATTGG
*
13295 ATTTAGAGGTTAAATTGATATTTCATCTAAA
1 ATTTAGGGGTTAAATTGATATTT-ATCTAAA
* * * * *
13326 ATTTAAGGGTCAAAATGATGTTTTATATAAA
1 ATTTAGGGGTTAAATTGAT-ATTTATCTAAA
13357 ATTTAGGGGTTAAATTGATATATTATCTAAA
1 ATTTAGGGGTTAAATTGATAT-TTATCTAAA
13388 ATTTAGGGGT
1 ATTTAGGGGT
13398 CAAACTCAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
30 1 0.02
31 55 0.93
32 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.41
Consensus pattern (30 bp):
ATTTAGGGGTTAAATTGATATTTATCTAAA
Found at i:17286 original size:25 final size:24
Alignment explanation
Indices: 17241--17290 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
17231 GTCAAGTTAG
* *
17241 AATAAAATTCACTCGTTTTATATTT
1 AATAAAATACACTCGTATTAT-TTT
17266 AATAAAATACACTTC-TATTATTTT
1 AATAAAATACAC-TCGTATTATTTT
17290 A
1 A
17291 TAATACCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 4 0.18
25 16 0.73
26 2 0.09
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (24 bp):
AATAAAATACACTCGTATTATTTT
Found at i:18126 original size:21 final size:21
Alignment explanation
Indices: 18100--18201 Score: 114
Period size: 21 Copynumber: 4.9 Consensus size: 21
18090 CTGCTGATAT
18100 GCTGCTTCTCTCTGTGTTGCC
1 GCTGCTTCTCTCTGTGTTGCC
* *
18121 GCTGCTTCTCTCTGTGCTGTC
1 GCTGCTTCTCTCTGTGTTGCC
* *
18142 GCTACTTCTCTCTGTGTTGTC
1 GCTGCTTCTCTCTGTGTTGCC
* * * *
18163 GTTGCTTCTCACTGTGCTGCT
1 GCTGCTTCTCTCTGTGTTGCC
* *
18184 GCTGCTGCTCTCTCTGTT
1 GCTGCTTCTCTCTGTGTT
18202 TCTCTTGCTT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.02, C:0.31, G:0.23, T:0.44
Consensus pattern (21 bp):
GCTGCTTCTCTCTGTGTTGCC
Found at i:18195 original size:42 final size:41
Alignment explanation
Indices: 18099--18201 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 41
18089 CCTGCTGATA
*
18099 TGCTGCTTCTCTCTGTGTTGCCGCTGCTTCTCTCTGTGCTG
1 TGCTGCTTCTCTCTGTGTTGCCGCTGCTTCTCACTGTGCTG
* * *
18140 TCGCTACTTCTCTCTGTGTTGTCGTTGCTTCTCACTGTGCTG
1 T-GCTGCTTCTCTCTGTGTTGCCGCTGCTTCTCACTGTGCTG
* *
18182 CTGCTGCTGCTCTCTCTGTT
1 -TGCTGCTTCTCTCTGTGTT
18202 TCTCTTGCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.02
42 51 0.96
43 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.22, T:0.45
Consensus pattern (41 bp):
TGCTGCTTCTCTCTGTGTTGCCGCTGCTTCTCACTGTGCTG
Found at i:18210 original size:42 final size:42
Alignment explanation
Indices: 18104--18212 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
18094 TGATATGCTG
* *
18104 CTTCTCTCTGTGTTGC-CGCTGCTTCTCTCTGTGCTGTCGCTA
1 CTTCTCTCTGTGTT-CTCGTTGCTTCTCACTGTGCTGTCGCTA
* *
18146 CTTCTCTCTGTGTTGTCGTTGCTTCTCACTGTGCTG-CTGCTG
1 CTTCTCTCTGTGTTCTCGTTGCTTCTCACTGTGCTGTC-GCTA
18188 CTGCTCTCTCTGT-TTCTC-TTGCTTC
1 CT--TCTCTCTGTGTTCTCGTTGCTTC
18213 ATTTTCAGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.02
42 44 0.76
43 4 0.07
44 9 0.16
ACGTcount: A:0.02, C:0.32, G:0.20, T:0.46
Consensus pattern (42 bp):
CTTCTCTCTGTGTTCTCGTTGCTTCTCACTGTGCTGTCGCTA
Found at i:20269 original size:20 final size:20
Alignment explanation
Indices: 20246--20343 Score: 54
Period size: 20 Copynumber: 4.5 Consensus size: 20
20236 GAATTTTTTT
20246 AAAATTTTATAATTTATATA
1 AAAATTTTATAATTTATATA
** *
20266 AAAATTAAATATTTTATAATTAA
1 AAAATTTTATAATTTAT-A-T-A
* *
20289 AAAATAGTTTATAATTAATTTA
1 AAAAT--TTTATAATTTATATA
* *
20311 AATAA-TATATAATTATAAAATA
1 AA-AATTTTATAATT-T-ATATA
20333 AAAATTTTATA
1 AAAATTTTATA
20344 TAAAATTTTT
Statistics
Matches: 56, Mismatches: 13, Indels: 16
0.66 0.15 0.19
Matches are distributed among these distances:
20 22 0.39
21 3 0.05
22 14 0.25
23 9 0.16
25 8 0.14
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (20 bp):
AAAATTTTATAATTTATATA
Found at i:20293 original size:18 final size:18
Alignment explanation
Indices: 20272--20306 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20262 TATAAAAATT
*
20272 AAATATTTTATAATTAAA
1 AAATAGTTTATAATTAAA
20290 AAATAGTTTATAATTAA
1 AAATAGTTTATAATTAA
20307 TTTAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAATAGTTTATAATTAAA
Found at i:20300 original size:38 final size:38
Alignment explanation
Indices: 20258--20332 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
20248 AATTTTATAA
* *
20258 TTTAT-ATAAAAATTAAATATTTTATAATTAAAAAATAG
1 TTTATAAT-AAAATTAAATAATATATAATTAAAAAATAG
* * *
20296 TTTATAATTAATTTAAATAATATATAATTATAAAATA
1 TTTATAATAAAATTAAATAATATATAATTAAAAAATA
20333 AAAATTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 29 0.94
39 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (38 bp):
TTTATAATAAAATTAAATAATATATAATTAAAAAATAG
Found at i:20331 original size:18 final size:18
Alignment explanation
Indices: 20280--20333 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
20270 TTAAATATTT
* * *
20280 TATAATTAAAAAATAGTT
1 TATAATTATAAAATAATA
*
20298 TATAATTAATTTAAATAATA
1 TATAATT-A-TAAAATAATA
20318 TATAATTATAAAATAA
1 TATAATTATAAAATAA
20334 AAATTTTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 14 0.48
19 2 0.07
20 13 0.45
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TATAATTATAAAATAATA
Found at i:20602 original size:186 final size:184
Alignment explanation
Indices: 20259--20649 Score: 599
Period size: 186 Copynumber: 2.1 Consensus size: 184
20249 ATTTTATAAT
* *
20259 TTATATAAAA-AT-TA-AATATTTTATAATTAAAAAATAGTTTATAATTAATTTAAATAATATAT
1 TTATATAAAATATATATAATATTTTATAATTAAAAAATAATTTACAATTAATTTAAATAATATAT
* *
20321 AATTATAAAATAAAAATTTTATATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
66 AATTATAAAATAAAAAATTTATATAAAATTTTTAATTAATTAATATTGATTTAGATTTAAAAGTT
* *
20386 ATTAGATCTTAAATTATTAATTGAGTTTTAAATGATTTGAGCTGAGCCTATTTG
131 ATTAGATCTTAAATTATTAATTGAGTTTTAAATGATTTGAGCTGAGCCCATATG
* *
20440 TTATATATAATATATATAATATTTTTTAATTCAGAAAAATAATTTACAATTAATTTAAATAATAT
1 TTATATAAAATATATATAATATTTTATAATT-A-AAAAATAATTTACAATTAATTTAAATAATAT
**
20505 ATAATTATAAAATAAAAAATTTATATAATTTTTTTAATTAATTAATATTGATTTAGATTTAAAAG
64 ATAATTATAAAATAAAAAATTTATATAAAATTTTTAATTAATTAATATTGATTTAGATTTAAAAG
* * * *
20570 TTATTGGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGGGTTGAGCCCATATG
129 TTATTAGATCTTAAATTATTAATTGAGTTTTAAATGATTTGAGCTGAGCCCATATG
* *
20626 TTATATAAAATATATTTAAAATTT
1 TTATATAAAATATATATAATATTT
20650 AAAATTTTAT
Statistics
Matches: 188, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
181 9 0.05
182 2 0.01
183 2 0.01
184 13 0.07
185 1 0.01
186 161 0.86
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (184 bp):
TTATATAAAATATATATAATATTTTATAATTAAAAAATAATTTACAATTAATTTAAATAATATAT
AATTATAAAATAAAAAATTTATATAAAATTTTTAATTAATTAATATTGATTTAGATTTAAAAGTT
ATTAGATCTTAAATTATTAATTGAGTTTTAAATGATTTGAGCTGAGCCCATATG
Found at i:25489 original size:16 final size:16
Alignment explanation
Indices: 25468--25500 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25458 TAATAAATAA
*
25468 ACGAACATAAACGAAC
1 ACGAACATAAACAAAC
25484 ACGAACATAAACAAAC
1 ACGAACATAAACAAAC
25500 A
1 A
25501 ATTTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.24, G:0.09, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACAAAC
Found at i:25589 original size:16 final size:16
Alignment explanation
Indices: 25564--25602 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
25554 CATTTAATAA
25564 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
*
25580 ATAAATGAACACGAAC
1 ATAAACGAACACGAAC
25596 ATAAACG
1 ATAAACG
25603 TTGGAGACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.21, G:0.13, T:0.10
Consensus pattern (16 bp):
ATAAACGAACACGAAC
Found at i:26711 original size:14 final size:14
Alignment explanation
Indices: 26694--26739 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
26684 AATGAACATA
26694 AACGAACATAACCG
1 AACGAACATAACCG
*
26708 AACGAGCATAACCG
1 AACGAACATAACCG
*
26722 AACGAACATAACTG
1 AACGAACATAACCG
26736 AACG
1 AACG
26740 TTCACGAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:29973 original size:9 final size:9
Alignment explanation
Indices: 29915--29975 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
29905 TTGTAGCTTA
29915 AAAGAGAAG
1 AAAGAGAAG
29924 -AAGAGAAGG
1 AAAGAGAA-G
*
29933 CTAAGA-AAG
1 -AAAGAGAAG
29942 AAAG-GAAG
1 AAAGAGAAG
*
29950 AAAGAAAAG
1 AAAGAGAAG
29959 AAAGAGAAG
1 AAAGAGAAG
29968 AAAGAGAA
1 AAAGAGAA
29976 AAAACGGGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
8 17 0.39
9 21 0.48
10 2 0.05
11 4 0.09
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (9 bp):
AAAGAGAAG
Found at i:37025 original size:21 final size:21
Alignment explanation
Indices: 36996--37070 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
36986 GCGATTACGT
* *
36996 ATTCACATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTTCATA
*
37017 ATTCGCATTGCGA-TTT-ATGT
1 ATTCGCATTGCGATTTTCAT-A
*
37037 ATTCGCGTTGCGATTTTCATA
1 ATTCGCATTGCGATTTTCATA
*
37058 ATTCGCAATGCGA
1 ATTCGCATTGCGA
37071 ATACGTAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 1 0.02
20 15 0.34
21 26 0.59
22 2 0.05
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (21 bp):
ATTCGCATTGCGATTTTCATA
Found at i:37042 original size:20 final size:20
Alignment explanation
Indices: 36979--37052 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
36969 GTATCGTAAA
* *
36979 TCGCAATGCGA-TTACGTAT
1 TCGCATTGCGATTTATGTAT
* *
36998 TCACATTGCGATTT-TCCTAAT
1 TCGCATTGCGATTTAT-GT-AT
37019 TCGCATTGCGATTTATGTAT
1 TCGCATTGCGATTTATGTAT
*
37039 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
37053 TCATAATTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
19 9 0.20
20 18 0.41
21 16 0.36
22 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTATGTAT
Found at i:37049 original size:41 final size:40
Alignment explanation
Indices: 36979--37077 Score: 135
Period size: 41 Copynumber: 2.5 Consensus size: 40
36969 GTATCGTAAA
*
36979 TCGCAATGCGATTACGTATTCACATTGCGATTTTCCTAAT
1 TCGCAATGCGATTACGTATTCACATTGCGATTTTCATAAT
* * * *
37019 TCGCATTGCGATTTATGTATTCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGA-TTACGTATTCACATTGCGATTTTCATAAT
*
37060 TCGCAATGCGAATACGTA
1 TCGCAATGCGATTACGTA
37078 AATCGCAACG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
40 15 0.30
41 35 0.70
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (40 bp):
TCGCAATGCGATTACGTATTCACATTGCGATTTTCATAAT
Found at i:37085 original size:20 final size:20
Alignment explanation
Indices: 37060--37193 Score: 171
Period size: 20 Copynumber: 6.7 Consensus size: 20
37050 TTTTCATAAT
37060 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
37080 TCGCAACGCGATTAAGTAAA
1 TCGCAATGCGAATACGTAAA
* *
37100 TCGCAACGC-AATTAAGTAAA
1 TCGCAATGCGAA-TACGTAAA
* *
37120 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
37141 TCGTAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
37161 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
37181 TCGCAATGCGAAT
1 TCGCAATGCGAAT
37194 CTGACTATCG
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
19 1 0.01
20 80 0.79
21 20 0.20
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:37142 original size:61 final size:61
Alignment explanation
Indices: 37060--37193 Score: 173
Period size: 61 Copynumber: 2.2 Consensus size: 61
37050 TTTTCATAAT
* *
37060 TCGCAATGCGAA-TACGTAAATCGCAACGCGATTAAGTAAATCGCAACGC-AATTAAGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAATCGCAACGCGAA-TAAGTAAA
* * * * * *
37120 TCGCAATGCGAATTAGGAAAATCGTAATGCGAATACGTAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAATCGCAACGCGAATAAGTAAA
37181 TCGCAATGCGAAT
1 TCGCAATGCGAAT
37194 CTGACTATCG
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 12 0.19
61 50 0.78
62 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (61 bp):
TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAATCGCAACGCGAATAAGTAAA
Found at i:37788 original size:19 final size:20
Alignment explanation
Indices: 37743--37793 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
37733 TTCGAGAATG
*
37743 AAAATCGCAACGCGGAAATG
1 AAAATCGCAACGCGGAAATA
**
37763 ACTATCGCAACGC-GAAATA
1 AAAATCGCAACGCGGAAATA
37782 AAAATCGCAACG
1 AAAATCGCAACG
37794 AGATAATCGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.45, C:0.24, G:0.20, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGCGGAAATA
Found at i:37843 original size:14 final size:14
Alignment explanation
Indices: 37824--37878 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
37814 CAAAATCGCA
37824 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
37838 TTGCGATTTTCATTTCGTG
1 TTGCGA--TTC-TCTC--G
37857 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
37871 TTGCGATT
1 TTGCGATT
37879 TTCATTTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 15 0.44
16 6 0.18
17 6 0.18
19 7 0.21
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:37866 original size:33 final size:33
Alignment explanation
Indices: 37824--37886 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
37814 CAAAATCGCA
37824 TTGCGATTCTCTCGTTGCGATTTTCATTTCGTG
1 TTGCGATTCTCTCGTTGCGATTTTCATTTCGTG
37857 TTGCGATTCTCTCGTTGCGATTTTCATTTC
1 TTGCGATTCTCTCGTTGCGATTTTCATTTC
37887 AACCAAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.10, C:0.22, G:0.19, T:0.49
Consensus pattern (33 bp):
TTGCGATTCTCTCGTTGCGATTTTCATTTCGTG
Found at i:39780 original size:94 final size:92
Alignment explanation
Indices: 39555--39832 Score: 390
Period size: 94 Copynumber: 3.1 Consensus size: 92
39545 TAGATTGCTT
* * * *
39555 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAATTAGT
1 AGTAAATTTGTTC-GTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
39616 ATTTGTCTTTTGTTTTATCTTTTGGTTGA
65 ATTTGTC-TTTGTTTTGTCTTTTGGTTGA
* *
39645 AGTATATTTG---GTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGCTAGTA
1 AGTAAATTTGTTCGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTA
39707 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
* *
39735 AGTAAATTTGTTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTGTTCG-TTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
39800 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
65 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
39828 AGTAA
1 AGTAA
39833 TGCAATCCAT
Statistics
Matches: 168, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
86 21 0.12
88 3 0.02
89 21 0.12
90 42 0.25
93 7 0.04
94 74 0.44
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (92 bp):
AGTAAATTTGTTCGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:39953 original size:20 final size:20
Alignment explanation
Indices: 39927--39984 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 20
39917 GGTTGAAATG
*
39927 AAAATCGCAACGAGAGAATG
1 AAAATCGCAACGAGAGAATA
** *
39947 ACTATCGCAACGCGA-AATA
1 AAAATCGCAACGAGAGAATA
39966 AAAATCGCAACGAGAGAAT
1 AAAATCGCAACGAGAGAAT
39985 CGCAACGTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGAGAGAATA
Found at i:39964 original size:39 final size:35
Alignment explanation
Indices: 39921--40044 Score: 130
Period size: 33 Copynumber: 3.5 Consensus size: 35
39911 TCTTTTGGTT
39921 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGAGAG-A-GA--ATCGCAACGC
* *
39960 GAAATAAAAATCGCAAC--GAGAGAATCGCAACGT
1 GAAATGAAAATCGCAACGAGAGAGAATCGCAACGC
*
39993 GAAATGAAAATCGCAACGACA-A-AATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAGAATCGCAACGC
**
40026 GAAACCAAAAATCGCAACG
1 GAAA-TGAAAATCGCAACG
40045 CGATTATAGT
Statistics
Matches: 75, Mismatches: 7, Indels: 11
0.81 0.08 0.12
Matches are distributed among these distances:
33 39 0.52
34 13 0.17
35 3 0.04
36 1 0.01
37 3 0.04
39 16 0.21
ACGTcount: A:0.48, C:0.22, G:0.20, T:0.10
Consensus pattern (35 bp):
GAAATGAAAATCGCAACGAGAGAGAATCGCAACGC
Found at i:39997 original size:33 final size:33
Alignment explanation
Indices: 39950--40044 Score: 136
Period size: 33 Copynumber: 2.8 Consensus size: 33
39940 GAGAATGACT
* *
39950 ATCGCAACGCGAAATAAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATAAAAATCGCAACGACAAA
* *
39983 ATCGCAACGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATAAAAATCGCAACGACAAA
*
40016 ATCGCAACGCGAAACCAAAAATCGCAACG
1 ATCGCAACGCGAAA-TAAAAATCGCAACG
40045 CGATTATAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 42 0.78
34 12 0.22
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.09
Consensus pattern (33 bp):
ATCGCAACGCGAAATAAAAATCGCAACGACAAA
Found at i:40588 original size:21 final size:21
Alignment explanation
Indices: 40564--40630 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
40554 TCATTCCTCG
40564 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
40585 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
40606 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
40627 AGAG
1 AGAG
40631 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:40588 original size:42 final size:41
Alignment explanation
Indices: 40517--40630 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 41
40507 ACCTGCCATC
* * * * * *
40517 CCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATT
1 CCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCA-T
*
40559 CCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTGTCAT
1 CCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCAT
* * *
40600 CGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 CCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
40631 CCCGATTCAC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.07
42 54 0.90
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (41 bp):
CCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCAT
Found at i:42017 original size:14 final size:14
Alignment explanation
Indices: 41981--42017 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
41971 TATTGTTTAA
*
41981 TTGATTTGCAAAAG
1 TTGATTTGTAAAAG
*
41995 ATGATTTGTAAAAG
1 TTGATTTGTAAAAG
42009 TTGATTTGT
1 TTGATTTGT
42018 TTAATTGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.43
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:42184 original size:19 final size:19
Alignment explanation
Indices: 42162--42312 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
42152 CGAAACTAAA
42162 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
42181 TTCGCTTTGC-A-ATTC--
1 TTCGCGTTGCGATTTTCAT
* *
42196 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
42214 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
42229 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
42247 TTCGCATTTCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
42262 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* * **
42280 TTCACATTGCGATAGTCATT
1 TTCGCGTTGCGATTTTCA-T
42300 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
42313 AGACATTAAG
Statistics
Matches: 93, Mismatches: 23, Indels: 31
0.63 0.16 0.21
Matches are distributed among these distances:
14 23 0.25
15 1 0.01
16 9 0.10
17 9 0.10
18 1 0.01
19 38 0.41
20 12 0.13
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:42203 original size:33 final size:33
Alignment explanation
Indices: 42166--42292 Score: 193
Period size: 33 Copynumber: 3.8 Consensus size: 33
42156 ACTAAATTCG
* *
42166 CGTTGCGATTTTCATTTCGCTTTGCAATTCCCT
1 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
*
42199 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
42232 CGTTGCGATTTTCATTTCGCATTT-CGATTCTCT
1 CGTTGCGATTTTCATTTCGC-TTTGCGATTCTCT
* *
42265 CGTTGCGATTTTCATTTCACATTGCGAT
1 CGTTGCGATTTTCATTTCGCTTTGCGAT
42293 AGTCATTTTC
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
32 2 0.02
33 82 0.95
34 2 0.02
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
Found at i:42358 original size:20 final size:20
Alignment explanation
Indices: 42286--42358 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
42276 TCATTTCACA
* *
42286 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTACGTG
* *
42306 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTACG-TG
*
42326 ATTGCGA-ACGTCATTTCCGTG
1 -TTGCGATA-GTCATTTACGTG
42347 TTGCGATAGTCA
1 TTGCGATAGTCA
42359 AATGAATGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCATTTACGTG
Found at i:44868 original size:24 final size:24
Alignment explanation
Indices: 44834--44887 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
44824 CTGAAAAATC
44834 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
44858 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
44882 ATCAAA
1 ATCAAA
44888 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:44901 original size:24 final size:24
Alignment explanation
Indices: 44834--44901 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
44824 CTGAAAAATC
* * *
44834 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
44858 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
44882 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
44902 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:45818 original size:21 final size:21
Alignment explanation
Indices: 45794--45838 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
45784 AATCGAAGTA
45794 CGAATTAGGAAAATCGCAACG
1 CGAATTAGGAAAATCGCAACG
* * *
45815 CGAATTTGGGAAATCGCAATG
1 CGAATTAGGAAAATCGCAACG
45836 CGA
1 CGA
45839 TAGTCAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (21 bp):
CGAATTAGGAAAATCGCAACG
Found at i:46479 original size:25 final size:26
Alignment explanation
Indices: 46441--46496 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
46431 ATAAATTAAA
* *
46441 TTTTAAATATATATATATCTATACCT
1 TTTTAAATATATATATATATATACAT
* *
46467 TTTTCAATA-ATATATTTATATACAT
1 TTTTAAATATATATATATATATACAT
46492 TTTTA
1 TTTTA
46497 TAGGAAAAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTAAATATATATATATATATACAT
Found at i:56566 original size:15 final size:15
Alignment explanation
Indices: 56546--56576 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
56536 AGACAATTTT
56546 ACCATCAGGAAGAGC
1 ACCATCAGGAAGAGC
56561 ACCATCAGGAAGAGC
1 ACCATCAGGAAGAGC
56576 A
1 A
56577 TCTATAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.26, T:0.06
Consensus pattern (15 bp):
ACCATCAGGAAGAGC
Found at i:58084 original size:22 final size:25
Alignment explanation
Indices: 58056--58103 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
58046 TAACAAATTA
58056 TTTTAA-TTGTTATA-TTA-ATTTT
1 TTTTAATTTGTTATAGTTATATTTT
*
58078 TTTTAATTTTTTATAGTTATATTTT
1 TTTTAATTTGTTATAGTTATATTTT
58103 T
1 T
58104 AACGATTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 7 0.32
24 3 0.14
25 6 0.27
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTTAATTTGTTATAGTTATATTTT
Found at i:65808 original size:45 final size:45
Alignment explanation
Indices: 65742--65828 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
65732 AATAGATGAT
*
65742 TCATGATTATCTCATCAAGTGTTGTGCAT-AAAAGTAATCATGACG
1 TCATGATTATCTCATCAAGTGTTGTGCATGAAAA-CAATCATGACG
* *
65787 TCATGATTATTTCATCCAGTGTTGTGCATGAAAACAATCATG
1 TCATGATTATCTCATCAAGTGTTGTGCATGAAAACAATCATG
65829 GTATTATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 34 0.89
46 4 0.11
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (45 bp):
TCATGATTATCTCATCAAGTGTTGTGCATGAAAACAATCATGACG
Done.