genome.fa.s6293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006293.1 Hibiscus syriacus cultivar Beakdansim tig00015038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166650

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6812--6865	27	2.0	27	96	3	101	33	20	7	38	1.80
13810--13835	9	2.9	9	100	0	52	34	7	23	34	1.83
15197--15339	64	2.2	64	84	8	184	30	23	16	28	1.96
18139--18195	23	2.6	22	86	5	80	29	15	15	38	1.89
20431--20465	12	2.8	13	91	8	63	48	8	5	37	1.58
20971--21039	15	4.3	16	73	12	61	18	26	31	23	1.97
20971--21039	32	2.2	32	89	0	102	18	26	31	23	1.97
20983--21042	15	3.9	15	76	8	66	20	25	31	23	1.98
21239--21269	16	1.9	16	93	0	53	19	29	35	16	1.93
27093--27506	125	3.3	125	86	3	562	28	27	18	25	1.98
27649--27746	3	32.7	3	100	0	196	33	0	0	66	0.92
34117--34159	14	3.2	13	81	12	52	51	0	0	48	1.00
34117--34149	2	17.5	2	87	12	52	48	0	0	51	1.00
40605--40639	13	2.8	13	91	4	54	57	0	0	42	0.99
43631--43671	8	5.2	8	82	5	57	34	0	29	36	1.58
49603--49666	18	3.6	18	70	14	51	64	0	0	35	0.94
49642--49689	20	2.4	19	80	10	51	68	2	4	25	1.18
60514--60538	2	12.5	2	100	0	50	52	0	0	48	1.00
60846--60885	20	2.0	21	85	14	57	65	10	0	25	1.24
66430--66459	2	15.5	2	93	6	53	50	0	0	50	1.00
68165--68199	17	2.1	17	100	0	70	34	28	5	31	1.81
69095--69127	14	2.5	13	86	13	50	48	24	21	6	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69102--69128	14	1.9	14	100	0	54	44	29	18	7	1.77
71164--71198	18	1.9	18	94	0	61	54	25	2	17	1.57
71369--71513	20	7.8	20	71	18	109	35	21	17	25	1.95
71397--71493	34	2.9	34	93	0	167	37	24	17	20	1.94
71431--71546	54	2.1	54	88	3	171	37	22	18	21	1.95
71431--71566	54	2.5	53	85	5	159	36	22	18	22	1.95
71543--71579	19	1.9	19	88	0	56	32	24	16	27	1.96
71571--71628	20	2.9	20	80	10	73	13	15	27	43	1.85
71749--71785	14	2.6	14	100	0	74	48	21	0	29	1.50
73164--73278	21	5.5	21	70	6	81	24	19	34	21	1.96
73164--73284	42	2.9	42	81	2	136	25	19	33	21	1.96
73763--73806	20	2.2	20	95	0	79	50	22	13	13	1.77
73793--73840	20	2.4	20	85	0	69	35	25	18	20	1.95
73850--73903	19	2.8	19	74	2	54	48	22	16	12	1.80
73909--73983	33	2.2	34	88	2	107	14	18	20	46	1.84
75899--75954	20	2.8	20	91	0	85	50	23	16	10	1.76
75902--75970	20	3.5	20	87	0	75	43	24	15	15	1.87
76402--76457	22	2.6	21	83	8	76	21	16	42	19	1.89
76667--76733	21	3.2	21	86	0	89	35	19	20	23	1.95
76779--76834	19	2.9	19	91	0	94	21	17	30	30	1.96
83178--83234	25	2.2	26	81	6	62	17	31	1	49	1.57
84204--84273	36	1.9	36	88	5	106	30	21	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84979--85012	17	2.0	17	94	0	59	32	5	17	44	1.73
85739--86024	47	6.1	47	93	0	491	23	23	9	43	1.83
86501--86556	22	2.7	21	83	8	78	26	25	16	32	1.96
86434--86629	95	2.1	96	82	4	236	28	21	14	35	1.92
90929--90999	36	2.0	36	86	5	99	39	19	16	23	1.92
105524--105561	18	2.1	18	85	9	51	15	31	5	47	1.68
107480--107522	21	2.0	22	81	4	52	37	6	6	48	1.57
117707--117770	10	6.1	10	78	8	65	4	14	1	79	0.96
117710--117786	32	2.5	32	83	8	88	5	14	1	79	0.97
117707--117785	10	8.0	9	76	17	61	5	13	1	79	0.95
117731--117786	16	3.5	16	78	4	60	5	14	1	78	1.00
119235--119413	64	2.8	62	81	12	193	27	17	25	29	1.97
119630--119669	20	2.0	21	85	14	57	45	7	5	42	1.54
120057--120083	2	13.5	2	100	0	54	51	0	0	48	1.00
127874--128052	64	2.8	62	81	12	193	27	17	25	29	1.97
127895--128082	64	2.9	61	81	10	180	28	17	24	29	1.97
128269--128308	20	2.0	21	85	14	57	45	7	5	42	1.54
130543--130664	61	2.0	61	91	0	199	31	31	16	20	1.95
130990--131038	24	2.0	24	96	0	89	40	12	12	34	1.80
141538--141603	32	2.1	32	97	0	123	13	15	13	57	1.66
144219--144274	27	2.0	27	82	3	67	23	14	17	44	1.85
145552--145808	45	5.8	45	91	3	405	30	21	7	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145552--145808	88	2.9	90	90	3	405	30	21	7	41	1.79
145925--146046	61	2.0	61	83	0	154	31	30	15	22	1.95
147697--147794	37	2.6	37	90	4	144	33	26	2	37	1.68
147993--148066	30	2.5	29	77	14	78	32	16	9	41	1.80
149706--149788	10	7.9	10	70	16	53	4	15	1	78	0.98
149697--149788	25	3.5	26	77	11	89	5	16	1	77	1.01
149999--150342	179	1.9	179	96	0	643	35	20	11	33	1.88
152606--152862	45	5.8	45	91	3	405	31	20	7	41	1.79
152606--152862	88	2.9	89	91	3	412	31	20	7	41	1.79
152979--153093	61	1.9	61	87	0	167	32	28	15	23	1.95
154990--155068	30	2.6	30	86	7	99	32	13	8	44	1.75
160185--160213	5	5.8	5	100	0	58	41	0	0	58	0.98
161117--161201	41	2.0	41	82	10	102	27	8	1	63	1.30
165502--165539	6	6.3	6	96	0	67	36	13	34	15	1.87

Tables:   1

The End!