Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006295.1 Hibiscus syriacus cultivar Beakdansim tig00015048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80382

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1008--1060
24
2.3
23
93
3
88
43
18
16
20
1.88
1890--2042
39
3.8
40
82
5
177
24
20
19
35
1.95
1890--2046
20
7.9
20
80
5
167
23
20
19
36
1.95
2049--2094
21
2.2
21
88
0
65
36
17
28
17
1.92
4081--4133
2
27.5
2
88
7
83
50
0
1
47
1.12
16583--16607
11
2.3
11
100
0
50
0
0
8
92
0.40
16629--16673
14
3.8
12
78
21
58
2
11
8
77
1.07
16629--16689
24
2.5
24
81
5
70
3
9
8
78
1.06
16933--16972
20
2.0
21
90
5
64
47
5
0
47
1.24
19741--20041
128
2.4
128
82
2
363
27
19
18
33
1.96
32753--32808
20
2.8
20
83
2
78
35
17
10
35
1.85
34203--34240
19
2.0
19
89
0
58
31
0
13
55
1.38
35856--35942
40
2.1
41
93
2
149
31
12
14
41
1.84
36133--36177
20
2.2
20
88
0
63
22
26
20
31
1.98
36219--36282
20
3.2
20
86
4
76
34
21
9
34
1.86
36234--36303
20
3.5
20
88
5
90
37
21
7
34
1.81
36514--36570
18
3.0
18
82
12
69
47
10
10
31
1.72
39142--39211
33
2.1
33
89
0
104
24
30
14
31
1.94
39550--39591
20
2.1
20
90
0
66
21
26
23
28
1.99
39629--39675
20
2.4
20
89
3
69
31
23
10
34
1.89
42190--42238
24
2.0
24
100
0
98
32
12
12
42
1.79
42873--42945
24
3.2
24
62
25
57
43
2
19
34
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42806--42981
45
3.9
45
91
0
282
39
6
22
31
1.79
45680--45866
11
17.0
11
76
13
120
80
7
11
0
0.94
45679--45865
6
31.7
6
75
13
95
80
7
11
0
0.92
45733--45865
1
133.0
1
65
0
59
82
6
10
0
0.87
45681--45866
53
3.4
55
81
12
188
80
7
11
0
0.94
49143--49191
24
2.0
24
96
0
89
34
8
12
44
1.71
49748--50013
45
5.9
45
91
0
426
39
7
21
31
1.82
66333--66361
14
2.0
15
93
6
51
55
10
20
13
1.68
66361--66401
21
1.9
22
90
5
66
56
9
24
9
1.62
68719--68755
6
6.2
6
100
0
74
32
0
16
51
1.45
74332--74397
20
3.3
20
71
0
69
34
1
6
57
1.33
74340--74404
20
3.2
20
67
16
53
32
3
6
58
1.38
74350--74410
20
3.0
20
66
17
54
31
3
9
55
1.48
74332--74437
40
2.7
40
82
5
108
35
2
7
53
1.44
74460--74505
2
23.5
2
95
4
85
47
0
0
52
1.00
76285--76328
17
2.6
17
96
0
79
40
11
4
43
1.61

Tables:   1

The End!