Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006296.1 Hibiscus syriacus cultivar Beakdansim tig00015049_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64976

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5532--5557
13
2.0
13
100
0
52
38
7
0
53
1.30
5565--5593
14
2.0
15
93
6
51
48
0
10
41
1.37
5507--5611
39
2.9
35
81
11
122
44
2
5
46
1.41
5579--5643
24
2.6
25
78
7
80
44
3
10
41
1.55
5543--5692
63
2.4
63
75
12
146
44
4
8
43
1.52
5660--5713
22
2.4
23
84
3
74
44
1
7
46
1.42
8345--8541
29
6.8
29
77
3
182
30
1
15
52
1.51
8353--8541
57
3.3
57
77
6
193
31
1
14
52
1.51
10026--10187
42
3.8
42
88
3
218
33
25
22
18
1.96
10026--10186
84
1.9
86
88
2
245
34
25
21
18
1.96
14974--15136
43
3.8
43
80
4
186
33
23
24
19
1.97
17888--17982
49
1.9
49
93
0
163
31
23
21
24
1.98
17989--18013
13
1.9
13
100
0
50
20
16
48
16
1.82
20700--20914
112
1.9
110
87
1
313
30
13
20
36
1.90
26623--26686
19
3.4
19
85
8
85
45
6
15
32
1.71
26754--26796
13
3.4
13
83
3
52
55
0
23
20
1.43
27007--27038
2
16.0
2
100
0
64
50
0
0
50
1.00
28364--28412
23
2.1
23
85
7
64
26
2
14
57
1.48
28904--28928
11
2.3
11
100
0
50
16
8
8
68
1.38
31791--31891
45
2.2
45
81
10
143
28
19
20
30
1.97
34242--34290
23
2.1
23
85
7
64
26
2
14
57
1.48
40887--41282
55
7.2
55
90
0
614
33
19
12
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40811--41282
165
2.8
165
86
2
626
33
19
11
34
1.88
50752--50786
13
2.7
13
90
0
52
34
8
20
37
1.83
54467--54500
17
2.0
17
88
0
50
41
11
5
41
1.66
59471--59625
39
4.0
38
80
5
145
33
23
24
18
1.97

Tables:   1

The End!