genome.fa.s6297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006297.1 Hibiscus syriacus cultivar Beakdansim tig00015050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54409

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4840--4889	24	2.1	24	88	7	75	58	14	2	26	1.47
6024--6067	23	2.0	22	86	13	63	4	25	0	70	1.06
10408--10457	24	2.1	24	88	7	75	58	14	2	26	1.47
11676--11717	22	1.9	22	85	0	57	23	7	0	69	1.13
14749--14815	28	2.3	29	82	5	82	52	8	14	23	1.70
16543--16576	4	8.2	4	87	6	50	23	0	2	73	0.97
16630--16753	13	9.2	13	69	20	69	25	7	0	66	1.22
17292--17330	20	2.0	20	94	0	69	28	5	28	38	1.78
21361--21389	13	2.2	13	100	0	58	27	6	27	37	1.82
23263--23299	19	2.1	18	90	10	58	40	8	5	45	1.56
25026--25068	18	2.4	18	84	0	59	60	2	34	2	1.22
27127--27260	58	2.3	58	88	0	196	41	24	5	28	1.78
27108--27289	87	2.1	86	82	2	231	42	23	4	29	1.74
27127--27289	29	5.7	29	77	0	157	42	24	5	27	1.77
27303--27338	18	2.0	18	100	0	72	11	22	50	16	1.77
27298--27326	13	2.2	13	100	0	58	13	24	44	17	1.85
27308--27359	26	2.0	26	84	0	68	19	23	42	15	1.89
34805--34844	21	1.9	21	94	0	71	30	15	7	47	1.72
34839--34937	33	3.0	32	91	4	153	33	7	14	45	1.71
34923--34977	13	4.2	13	75	13	58	34	3	12	49	1.59
35173--35229	21	2.7	21	91	0	96	19	26	26	28	1.99
35374--35429	15	3.6	15	79	9	67	30	10	12	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35376--35426	17	3.1	17	83	5	70	33	7	11	47	1.69
35520--35551	16	2.0	17	88	11	50	43	21	21	12	1.86
37532--37672	29	4.9	29	71	8	99	41	19	5	32	1.75
37722--37772	17	2.9	17	91	2	84	13	23	45	17	1.84
37752--37777	12	2.2	12	100	0	52	15	23	46	15	1.83
42744--42780	19	2.1	18	90	10	58	40	8	5	45	1.56
46905--46994	25	3.4	25	79	14	99	34	0	36	28	1.58
48667--48699	3	10.7	3	93	6	57	69	0	30	0	0.88
53051--53154	51	2.0	52	92	1	174	21	14	16	48	1.81

Tables:   1

The End!