Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006299.1 Hibiscus syriacus cultivar Beakdansim tig00015057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114754

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13152--13190
19
2.1
19
95
0
69
0
15
23
61
1.33
16330--16358
11
2.6
11
100
0
58
24
6
0
68
1.13
17678--17800
17
7.1
17
74
3
93
40
8
12
38
1.74
21564--21686
17
7.1
17
70
10
79
41
8
12
37
1.74
25360--25409
17
2.9
17
81
0
55
44
6
10
40
1.63
29242--29284
17
2.5
17
84
0
59
39
4
13
41
1.66
29316--29348
17
1.9
17
93
0
57
33
9
21
36
1.85
33432--33467
2
18.0
2
100
0
72
50
0
0
50
1.00
34257--34296
21
2.0
20
85
9
55
37
0
12
50
1.41
36724--36761
20
1.9
20
94
0
67
36
10
26
26
1.89
44427--44480
26
2.1
26
100
0
108
14
18
12
53
1.72
44816--44856
2
20.5
2
100
0
82
51
0
0
48
1.00
55022--55090
21
3.3
19
78
8
57
23
7
27
42
1.80
56830--57262
106
4.0
105
88
4
564
21
18
24
34
1.96
72127--74087
981
2.0
980
99
0
3913
36
20
13
29
1.91
76155--76189
18
1.9
18
88
0
52
22
17
11
48
1.79
82006--82167
87
1.9
87
89
0
252
42
9
13
34
1.76
83021--83093
23
3.2
23
90
0
110
36
21
5
35
1.77
85701--85758
12
4.8
12
84
0
71
20
31
6
41
1.79
85701--85758
6
9.7
6
80
0
53
20
31
6
41
1.79
87249--87295
20
2.4
19
79
10
58
19
19
10
51
1.75
90185--90348
72
2.3
73
82
1
204
32
21
20
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90314--90349
19
1.9
19
88
5
56
27
27
22
22
1.99
92252--92291
21
1.9
21
84
0
53
52
2
10
35
1.48
96107--96160
21
2.6
21
93
0
90
24
27
18
29
1.98
96684--96716
12
2.6
13
90
4
50
36
12
6
45
1.66
98793--98928
72
1.9
72
85
0
191
32
21
20
25
1.98
108074--108106
17
1.9
17
93
0
57
69
0
12
18
1.18
110668--110705
20
1.9
20
84
10
51
26
10
21
42
1.85
111876--111924
14
3.8
14
69
20
52
42
0
0
57
0.99
111915--112000
21
4.2
20
77
15
77
39
0
1
59
1.05
111842--111971
12
10.9
12
65
25
55
39
0
1
59
1.07
111936--111996
17
3.4
16
74
17
50
39
0
0
60
0.97

Tables:   1

The End!