genome.fa.s63.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000063.1 Hibiscus syriacus cultivar Beakdansim tig00000103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63270

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3539--3573	18	1.9	18	100	0	70	54	0	11	34	1.37
4645--4721	37	2.1	37	85	4	102	48	1	3	46	1.28
3742--4904	582	2.0	581	96	1	2161	36	13	8	41	1.76
12578--12627	25	2.0	26	84	7	68	44	8	10	38	1.68
12773--13079	20	15.4	20	72	15	192	43	24	14	17	1.87
12749--13083	40	8.4	40	84	5	403	42	24	14	17	1.87
12785--13080	60	4.9	61	79	7	336	42	24	14	18	1.87
12749--13059	100	3.1	100	85	3	430	42	24	15	18	1.88
13195--13245	22	2.3	22	89	0	75	21	41	15	21	1.90
14107--14143	18	2.1	18	89	0	56	51	10	5	32	1.60
17670--17716	18	2.6	18	82	3	58	31	14	23	29	1.95
17690--17765	19	3.9	19	78	13	75	32	9	21	36	1.85
17728--17781	19	2.7	19	88	5	72	27	9	24	38	1.86
17748--17803	20	2.7	22	86	8	73	21	14	25	39	1.91
17823--17876	20	2.7	19	69	8	54	25	14	31	27	1.95
20463--20546	33	2.6	32	86	7	116	57	3	13	26	1.52
20663--20729	25	2.5	27	80	11	84	62	2	11	22	1.42
23005--23029	13	1.9	13	100	0	50	40	8	28	24	1.83
24339--24606	122	2.2	122	84	1	349	27	12	22	36	1.91
24364--24558	61	3.2	60	68	13	164	27	12	22	37	1.90
24309--25017	342	2.1	342	83	2	888	27	14	23	34	1.93
24663--24946	122	2.3	122	79	1	327	27	13	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24940--25503	139	4.1	139	82	3	553	25	15	26	32	1.95
24937--25503	278	2.0	277	80	6	637	25	14	27	32	1.95
27619--27681	25	2.6	24	82	9	74	55	3	7	33	1.45
28548--28620	16	4.7	16	81	8	80	2	12	4	80	0.95
28547--28604	17	3.5	17	85	4	82	1	12	5	81	0.94
28543--28627	7	11.7	7	80	16	77	2	12	4	80	0.97
34936--34982	24	2.0	24	86	0	67	76	0	4	19	0.95
45903--45984	35	2.4	34	84	8	96	59	3	10	25	1.47
55420--55449	10	2.8	11	90	10	53	83	6	0	10	0.81
56611--56686	39	1.9	39	89	0	116	18	17	40	23	1.91
57395--57712	73	4.3	73	89	1	456	31	21	20	27	1.98
58384--58441	22	2.6	22	86	0	80	37	13	15	32	1.87

Tables:   1

The End!