genome.fa.s630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000630.1 Hibiscus syriacus cultivar Beakdansim tig00001226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61833

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432--2129	198	3.5	195	81	8	721	30	14	14	40	1.86
4637--6684	199	10.2	199	86	5	2849	27	15	15	42	1.87
6054--6105	21	2.5	21	96	0	95	30	21	13	34	1.92
5855--6304	220	2.0	220	90	2	699	26	16	15	41	1.88
4637--6687	813	2.6	795	92	3	3380	27	15	15	42	1.87
4637--6687	398	5.1	398	91	3	3326	27	15	15	42	1.87
9280--9321	15	2.8	15	88	0	66	26	2	52	19	1.58
9672--10968	199	6.5	199	94	0	2218	27	14	15	42	1.86
9672--10968	596	2.2	597	94	0	2245	27	14	15	42	1.86
11314--11362	19	2.6	19	90	3	73	57	10	2	30	1.43
12829--12867	18	2.2	18	95	0	69	5	41	0	53	1.23
14860--14908	19	2.6	20	81	12	68	40	16	0	42	1.48
15291--16647	182	7.6	181	81	6	1404	26	15	13	44	1.83
15628--15950	164	2.0	163	84	1	423	27	13	12	46	1.79
16588--16626	20	1.9	21	94	5	71	10	15	28	46	1.78
18688--18753	34	1.9	34	84	0	87	51	22	7	18	1.71
18777--18906	65	2.0	66	92	4	219	26	15	4	53	1.61
18845--19116	143	1.9	142	93	2	474	27	11	5	55	1.58
19378--19404	13	2.1	13	100	0	54	37	18	7	37	1.79
23896--23946	24	2.1	24	100	0	102	25	17	7	49	1.74
23886--23945	24	2.3	26	83	13	88	25	16	6	51	1.68
34224--34739	257	2.0	253	96	3	948	31	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37415--37485	1	71.0	1	71	0	52	85	5	8	0	0.72
37407--37485	22	3.5	22	81	14	90	84	5	8	1	0.81
37415--37483	12	5.8	12	91	8	115	85	5	8	0	0.74
37407--37483	24	3.3	23	87	10	113	84	5	9	1	0.82
37415--37485	11	6.1	11	88	8	97	85	5	8	0	0.72
37483--37568	45	1.9	45	81	9	104	39	17	29	13	1.88
38514--38592	37	2.1	37	97	0	149	31	7	30	30	1.85
38811--39365	54	10.0	54	84	6	662	34	22	23	19	1.96
39152--39287	68	2.0	68	92	0	227	32	25	20	21	1.98
39381--39514	55	2.4	55	88	0	196	30	14	25	29	1.95
39697--39732	3	12.7	3	88	11	58	33	0	0	66	0.92
39696--39730	8	4.2	8	89	7	52	34	0	0	65	0.93
39697--39732	11	3.2	11	92	4	54	33	0	0	66	0.92
40931--40963	12	2.8	12	90	0	57	54	0	0	45	0.99
42817--42880	28	2.2	28	83	10	67	37	1	4	56	1.30
43399--43492	21	4.5	21	89	5	120	21	25	35	18	1.95
45250--45328	33	2.4	34	83	8	101	60	1	0	37	1.05
49603--49651	6	8.2	6	91	8	82	16	16	18	48	1.81
49603--49651	19	2.7	18	90	9	82	16	16	18	48	1.81
51947--52002	16	3.1	18	85	12	62	69	0	23	7	1.12
52940--53261	123	2.6	123	80	5	355	36	14	23	25	1.92
53469--53837	125	3.0	125	87	2	535	31	16	27	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55002--56160	34	33.8	34	92	1	1709	35	23	20	20	1.96
60064--60089	6	4.3	6	100	0	52	15	34	0	50	1.45
60139--60182	15	2.6	18	82	10	58	4	27	0	68	1.09

Tables:   1

The End!