genome.fa.s6300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006300.1 Hibiscus syriacus cultivar Beakdansim tig00015058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51872

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247--273	14	1.9	14	100	0	54	66	25	0	7	1.17
288--350	2	31.5	2	100	0	126	50	0	0	49	1.00
1715--1781	23	3.0	23	86	6	93	37	22	5	34	1.79
2139--2201	23	2.7	23	92	0	99	38	20	4	36	1.74
2511--2549	20	2.0	20	89	0	60	53	7	10	28	1.62
2565--2622	22	2.6	23	83	8	75	36	18	5	39	1.74
1553--3810	418	5.4	423	91	6	3575	40	12	7	39	1.71
1553--3810	841	2.7	832	91	5	3668	40	12	7	39	1.71
2968--3037	21	3.2	23	82	10	83	38	22	4	34	1.74
3383--3451	23	3.0	22	78	19	79	37	20	2	39	1.68
4041--4110	34	2.1	32	89	5	104	21	31	15	31	1.95
4318--4357	21	1.9	22	90	10	66	12	10	40	37	1.77
4385--4427	21	2.0	21	95	0	77	27	27	20	23	1.99
4537--4611	19	4.1	19	78	15	86	12	24	40	24	1.88
4539--4606	34	2.0	34	91	0	109	13	25	36	25	1.92
4685--4752	29	2.3	30	85	9	88	45	16	5	32	1.71
5963--6010	19	2.5	20	82	3	62	29	12	6	52	1.63
6861--6930	34	2.1	32	89	5	104	21	31	15	31	1.95
7145--7184	21	1.9	22	90	10	66	12	10	40	37	1.77
7210--7252	21	2.0	21	95	0	77	27	27	20	23	1.99
7289--7344	19	2.9	19	100	0	112	16	26	42	14	1.86
7382--7441	20	3.2	20	77	22	85	10	26	40	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7403--7432	15	2.0	15	100	0	60	13	26	33	26	1.93
7546--7605	29	2.0	31	90	6	97	41	18	6	33	1.76
7639--7698	23	2.6	23	89	0	84	40	16	3	40	1.65
8057--8119	23	2.7	23	92	0	99	38	20	4	36	1.74
8469--8539	21	3.3	21	77	13	72	40	21	2	35	1.68
8474--8544	23	3.2	23	80	15	94	40	21	2	35	1.68
7639--9156	425	3.6	426	93	4	2590	39	11	7	40	1.71
8896--8968	23	3.2	23	78	7	85	39	20	4	35	1.72
9301--9365	25	2.6	25	97	0	121	36	12	10	40	1.78
11826--12316	183	2.7	183	96	0	903	33	17	14	34	1.90
12693--12763	21	3.3	21	77	13	72	39	22	4	33	1.74
12698--12768	23	3.2	22	84	8	90	39	22	4	33	1.74
13125--13157	15	2.2	15	94	0	57	27	21	6	45	1.75
14350--14422	3	24.3	3	77	0	65	23	32	5	38	1.78
14350--14435	18	4.8	18	83	0	100	22	32	5	39	1.78
14366--14430	24	2.7	24	85	0	94	21	33	7	36	1.82
14354--14435	6	13.7	6	78	0	74	20	32	6	40	1.77
15898--17069	200	5.9	199	96	0	2168	31	17	14	36	1.90
17188--17236	19	2.6	19	93	0	80	57	10	2	30	1.43
19025--19090	33	2.0	33	90	0	105	22	48	0	28	1.51
19124--19167	21	2.1	21	91	0	70	15	31	11	40	1.83
21191--21243	24	2.2	24	83	6	63	26	7	13	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21547--21593	20	2.3	20	89	10	78	17	17	10	55	1.69
21334--21805	180	2.6	180	91	1	730	26	17	14	41	1.87
49009--49071	33	1.9	33	90	6	101	9	38	25	26	1.87
49082--49132	10	5.4	10	82	17	65	9	27	39	23	1.86
49188--49245	29	2.0	29	89	0	89	22	25	36	15	1.94

Tables:   1

The End!