genome.fa.s6301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006301.1 Hibiscus syriacus cultivar Beakdansim tig00015059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116299

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1668--1737	29	2.3	30	87	4	97	40	8	4	47	1.54
1900--2011	55	2.0	55	84	0	143	46	16	8	28	1.76
4013--4058	18	2.5	19	80	13	53	32	0	6	60	1.22
9435--9468	15	2.3	15	89	0	50	26	14	0	58	1.36
11910--11964	26	2.2	26	83	3	67	20	21	25	32	1.97
15121--15158	17	2.3	16	86	13	51	42	10	10	36	1.74
15785--15952	77	2.2	77	98	0	327	29	21	17	32	1.96
17530--17565	17	2.1	17	94	0	63	13	25	44	16	1.85
26755--26796	18	2.3	18	91	0	66	47	14	2	35	1.57
26764--26805	10	4.7	9	83	16	52	47	7	0	45	1.30
26764--26805	18	2.3	18	95	0	75	47	7	0	45	1.30
28770--28863	30	3.1	30	78	3	107	39	6	22	31	1.79
29211--29240	15	2.0	15	93	0	51	50	3	20	26	1.64
29538--29691	32	4.9	31	79	9	127	30	18	18	31	1.96
33182--33209	2	14.0	2	100	0	56	50	0	0	50	1.00
33347--33376	15	2.0	15	93	0	51	50	3	20	26	1.64
33682--33786	32	3.3	32	86	4	133	29	18	19	33	1.95
35134--35190	24	2.4	24	93	0	105	38	0	24	36	1.56
35451--35524	18	3.9	18	72	10	58	22	17	31	28	1.97
35467--35528	18	3.2	19	73	13	63	27	14	29	29	1.95
35451--35527	39	2.0	39	92	0	127	24	16	29	28	1.97
40701--40736	12	3.0	12	95	0	63	36	8	33	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40970--41028	25	2.3	24	75	16	57	37	10	10	42	1.73
41347--41390	23	1.9	23	90	0	70	18	25	25	31	1.97
41361--41435	24	3.2	24	68	9	64	22	22	21	33	1.97
44947--45107	64	2.5	64	84	4	200	34	19	19	26	1.96
45702--45765	30	2.1	30	85	0	83	18	20	26	34	1.96
49110--49270	64	2.5	64	84	4	200	34	19	19	26	1.96
49875--49938	30	2.1	30	85	0	83	18	18	28	34	1.95
54590--54648	25	2.3	24	81	16	66	37	11	10	40	1.76
54968--55055	23	3.8	24	76	13	85	19	23	26	30	1.98
58133--58195	28	2.2	28	100	0	126	20	22	14	42	1.88
58163--58250	34	2.6	34	85	5	106	26	23	14	35	1.94
64483--64544	3	20.7	3	74	12	56	62	3	3	30	1.26
64483--64546	24	2.7	23	83	11	76	64	3	3	29	1.24
64859--65038	46	4.1	46	74	13	182	25	18	30	25	1.98
64687--65120	129	3.3	128	91	4	602	24	19	32	24	1.98
64777--65104	40	7.8	40	72	12	180	25	18	31	24	1.98
64825--64992	83	2.0	85	85	7	232	24	20	30	25	1.99
65153--65214	28	2.2	28	88	5	90	51	12	11	24	1.72
65964--66023	28	2.2	27	81	3	66	51	16	11	20	1.75
65978--66069	28	3.3	28	86	6	132	48	15	11	23	1.78
65978--66055	28	2.8	29	92	5	133	48	14	11	25	1.77
66364--66468	35	3.0	35	82	8	140	38	11	18	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70453--70514	32	1.9	32	86	0	88	58	11	14	16	1.64
73425--73454	10	3.1	10	95	4	53	0	6	0	93	0.35
73964--74025	3	20.7	3	74	12	56	62	3	3	30	1.26
73964--74027	24	2.7	23	83	11	76	64	3	3	29	1.24
78000--78038	13	3.1	13	85	14	55	17	2	0	79	0.84
79307--79381	29	2.6	29	84	0	96	18	40	26	14	1.90
79308--79395	29	3.0	29	84	0	95	20	37	30	11	1.88
79610--79694	29	2.9	29	83	0	107	12	29	40	17	1.87
81790--81838	15	3.3	15	88	0	71	12	18	61	8	1.55
82869--82937	3	22.7	3	85	8	95	62	0	1	36	1.04
83865--83932	31	2.2	30	82	7	75	38	4	1	55	1.29
89197--89239	21	2.0	21	82	13	52	74	6	2	16	1.14
102050--102163	44	2.7	43	83	6	151	34	17	16	31	1.93
102328--102438	42	2.6	43	82	12	131	35	30	12	21	1.91
102328--102441	43	2.7	42	85	6	142	34	29	13	22	1.92
102987--103057	32	2.2	32	87	0	97	43	5	4	46	1.46

Tables:   1

The End!