genome.fa.s6303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006303.1 Hibiscus syriacus cultivar Beakdansim tig00015062_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108195

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2265--2315	2	25.5	2	100	0	102	49	0	0	50	1.00
5303--5336	16	2.2	16	89	5	52	70	8	14	5	1.31
6666--7440	182	4.3	181	84	6	973	44	12	15	27	1.83
6666--7440	363	2.1	360	87	5	1102	44	12	15	27	1.83
7902--7944	18	2.3	19	88	4	61	51	2	11	34	1.51
11500--11548	19	2.6	19	93	0	80	30	2	12	55	1.48
11920--13214	198	6.5	198	91	0	1937	41	15	14	28	1.86
11920--13178	397	3.2	395	91	1	1957	42	15	14	27	1.86
11920--13178	595	2.1	596	90	0	2009	42	15	14	27	1.86
13546--13587	15	2.8	15	88	0	66	19	52	2	26	1.58
13923--13956	2	17.0	2	100	0	68	50	0	0	50	1.00
14763--14796	6	5.7	6	89	0	50	44	2	32	20	1.67
16375--17537	200	5.9	200	73	14	923	41	16	13	28	1.86
16373--17656	378	3.3	384	81	8	1354	41	16	13	28	1.87
16373--17532	578	2.0	579	89	3	1766	41	16	13	28	1.86
16952--17848	200	4.5	201	86	3	904	39	16	14	29	1.88
16940--17848	401	2.3	400	79	5	937	39	16	14	29	1.88
21629--21791	87	1.9	87	90	0	263	31	13	12	41	1.82
21707--21763	23	2.5	23	88	0	87	35	15	7	42	1.75
23043--23130	17	5.1	18	70	21	55	38	0	2	59	1.10
23049--23137	34	2.7	33	77	10	85	39	0	2	58	1.11
23277--23330	17	3.2	17	72	0	54	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24914--25007	21	4.5	21	92	5	145	18	34	27	20	1.95
25530--25626	33	2.9	34	84	6	126	54	4	3	38	1.35
25528--25633	34	3.2	33	81	10	126	53	4	2	38	1.36
26027--27034	128	7.9	128	94	1	1738	31	20	25	23	1.98
27107--27147	8	5.2	8	82	5	57	36	29	0	34	1.58
40814--40858	22	2.0	22	95	0	81	20	31	8	40	1.83
66339--66366	2	14.0	2	100	0	56	50	0	0	50	1.00
71226--71324	33	3.1	33	88	2	139	38	23	13	25	1.91
75156--75315	65	2.5	63	85	6	214	30	22	20	27	1.98
75287--75335	19	2.6	19	84	9	57	24	28	20	26	1.99
81073--81167	21	4.4	21	79	9	95	28	26	21	24	1.99
81073--81167	44	2.2	42	85	7	120	28	26	21	24	1.99
85449--85522	33	2.2	33	90	0	112	37	21	12	28	1.89
85657--85710	22	2.3	23	81	15	67	29	12	0	57	1.36
85673--85718	21	2.1	22	84	4	58	28	6	0	65	1.17
85908--85932	10	2.5	10	100	0	50	16	12	12	60	1.60
85883--85969	24	3.7	24	78	7	88	14	9	14	60	1.57
89488--89539	25	2.1	25	96	0	95	48	7	15	28	1.73
104841--104927	45	1.9	45	88	4	131	34	17	16	32	1.92

Tables:   1

The End!