genome.fa.s6304.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006304.1 Hibiscus syriacus cultivar Beakdansim tig00015068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131734

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3921--3968	19	2.4	21	86	13	75	22	16	27	33	1.96
9738--9848	44	2.6	44	84	5	140	34	18	17	30	1.93
10013--10120	42	2.5	44	82	12	129	35	30	12	21	1.91
9927--10126	43	4.7	42	73	11	149	33	25	16	25	1.95
10670--10741	32	2.2	32	85	4	92	41	5	5	47	1.50
20763--20832	2	35.0	2	97	0	131	48	0	1	50	1.09
28631--28672	18	2.3	18	87	0	57	52	2	16	28	1.56
29438--29494	24	2.4	24	96	0	105	24	22	10	42	1.85
30039--30080	15	2.8	15	92	0	57	33	26	19	21	1.97
30039--30072	15	2.3	15	100	0	68	35	23	20	20	1.96
30407--30463	29	2.0	29	92	0	96	28	3	21	47	1.67
30413--30471	29	2.0	29	90	0	91	25	6	22	45	1.76
30889--30946	23	2.6	23	94	5	102	39	3	12	44	1.58
30957--30994	12	3.2	12	85	7	60	57	0	0	42	0.98
34121--34176	20	2.8	19	73	13	51	55	1	0	42	1.10
34116--34187	31	2.3	31	83	7	92	61	1	0	37	1.05
34676--34725	25	2.0	24	84	3	64	24	12	10	54	1.67
38101--38214	59	1.9	60	81	12	137	43	12	2	41	1.56
38503--38559	6	9.7	6	78	16	57	28	0	1	70	0.98
38503--38546	17	2.5	18	82	14	56	25	0	2	72	0.96
38503--38558	29	1.9	29	82	13	71	28	0	1	69	0.98
38532--38608	23	3.1	25	81	9	86	40	0	1	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38532--38615	24	3.5	24	76	16	84	41	0	1	57	1.06
38539--38673	61	2.2	64	94	5	249	42	0	1	55	1.08
38571--38652	37	2.2	37	83	14	98	43	0	1	54	1.07
38592--38686	23	3.6	26	76	15	88	43	1	2	53	1.19
39178--39238	31	2.0	31	93	0	104	45	8	6	39	1.60
40540--40583	21	2.0	24	86	13	67	47	2	4	45	1.35
40550--40593	22	2.0	21	83	12	54	47	2	6	43	1.42
41151--41192	21	2.0	20	86	4	57	40	7	14	38	1.73
50004--50033	15	2.1	14	93	6	51	40	6	10	43	1.64
50237--50267	14	2.3	14	94	5	55	61	12	0	25	1.32
63122--63179	21	2.6	22	78	8	73	70	5	0	24	1.07
63566--63620	29	2.0	27	86	13	76	47	14	1	36	1.55
64035--64173	71	2.0	71	89	0	215	47	7	5	40	1.53
65596--65631	16	2.3	16	90	4	56	61	2	5	30	1.33
67942--67976	18	1.9	18	94	0	61	57	0	14	28	1.38
72931--72965	18	1.9	18	88	0	52	54	0	17	28	1.43
77011--77057	17	2.7	17	81	12	51	68	0	4	27	1.08
78399--78475	3	25.7	3	81	5	93	61	3	1	33	1.23
89827--89880	23	2.3	23	77	0	54	20	24	9	46	1.79
91148--91415	133	2.0	131	97	1	500	25	15	14	44	1.84
93349--93389	21	2.0	21	85	4	57	43	0	39	17	1.49
96462--96502	21	2.0	21	85	4	57	43	0	39	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100537--100570	15	2.2	16	89	5	52	47	2	2	47	1.32
101582--101639	28	2.1	27	87	9	82	37	3	6	51	1.46
102039--102078	3	13.7	3	94	5	73	65	0	0	35	0.93
102039--102078	14	2.8	14	96	3	71	65	0	0	35	0.93
102402--102494	35	2.7	35	83	3	116	45	25	0	29	1.54
102663--102957	152	2.0	149	87	6	425	35	6	9	48	1.61
103720--103804	35	2.4	35	86	3	109	32	0	22	44	1.53
104585--104637	22	2.3	22	81	12	63	30	1	0	67	1.01
105536--105579	20	2.2	20	88	8	63	31	4	0	63	1.14
105613--105679	24	3.0	23	82	14	86	25	0	0	74	0.82
105616--105709	15	6.0	15	69	16	66	31	0	1	67	0.98
105617--105706	7	11.5	8	70	20	57	31	0	1	67	0.98
109917--110538	310	2.0	311	98	0	1212	22	23	25	28	1.99
118167--118195	14	2.1	14	93	6	51	48	6	6	37	1.57
118157--118241	40	2.2	40	81	8	104	48	2	3	45	1.32
118194--118316	60	2.0	62	84	7	162	42	3	6	47	1.45
118244--118557	37	8.8	37	83	9	343	44	4	6	45	1.47
118244--118591	75	4.8	74	82	8	366	45	3	5	45	1.45
118500--118546	24	2.0	24	86	0	67	44	4	6	44	1.49
118546--118583	15	2.6	15	87	4	51	47	0	5	47	1.24
118547--118599	16	3.4	16	76	23	51	47	0	3	49	1.19
118534--118599	33	2.0	34	82	8	82	46	0	3	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119752--119785	15	2.1	17	89	10	54	20	0	2	76	0.92
119902--119945	8	5.2	9	77	22	51	43	0	0	56	0.99
123444--123632	95	2.0	95	87	4	274	31	18	17	32	1.95
124798--125366	84	6.8	83	79	5	527	30	24	19	25	1.98
124798--125365	169	3.4	169	81	4	603	30	24	19	25	1.98
125001--125332	166	2.0	164	87	1	475	30	24	19	25	1.98
124790--125365	250	2.3	250	83	2	699	30	23	19	25	1.98
126008--126120	38	3.0	38	69	12	88	43	3	8	44	1.52
126123--126451	37	9.2	37	82	10	366	45	3	6	44	1.43
126143--126465	75	4.6	70	81	11	358	46	2	5	44	1.42
126377--126423	24	2.0	24	86	0	67	44	4	6	44	1.49
126475--126532	5	10.8	5	76	12	53	22	1	3	72	1.09
126720--126749	16	1.9	15	93	6	51	20	40	26	13	1.89
127690--127730	2	22.5	2	81	18	54	43	0	0	56	0.99

Tables:   1

The End!