Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006305.1 Hibiscus syriacus cultivar Beakdansim tig00015069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109288
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:7301 original size:30 final size:30
Alignment explanation
Indices: 7152--7284 Score: 248
Period size: 30 Copynumber: 4.4 Consensus size: 30
7142 TCCGAAGGAC
*
7152 CTATCCAGAAGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7182 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7212 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
7242 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
*
7272 CTATCCATAGGTC
1 CTATCCAGAGGTC
7285 CCGAAGAACC
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 101 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7301 original size:60 final size:60
Alignment explanation
Indices: 7152--7309 Score: 235
Period size: 60 Copynumber: 2.6 Consensus size: 60
7142 TCCGAAGGAC
* *
7152 CTATCCAGAAGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
*
7212 CTATCCAGAGGTCATAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
* * * * *
7272 CTATCCATAGGTCCCGAAGAACCTAGGTAAACTATCCA
1 CTATCCAGAGGTCACAAAGATCCTCGGT-AACTATCCA
7310 TATGTTCCTT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
60 81 0.90
61 9 0.10
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (60 bp):
CTATCCAGAGGTCACAAAGATCCTCGGTAACTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:7324 original size:31 final size:31
Alignment explanation
Indices: 7270--7362 Score: 89
Period size: 31 Copynumber: 3.0 Consensus size: 31
7260 GATCCTCGGT
* *
7270 AACTATCCATAGGTCCCGAAGAACCTAGGTA
1 AACTATCCATATGTCCCGAAGAACATAGGTA
* **
7301 AACTATCCATATGTTCCTTAGAACATAGGTA
1 AACTATCCATATGTCCCGAAGAACATAGGTA
* * * *
7332 TATTGTCCATATGTCTCGAA-AGACATAGGTA
1 AACTATCCATATGTCCCGAAGA-ACATAGGTA
7363 GTTCTTTGAC
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
30 1 0.02
31 48 0.98
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (31 bp):
AACTATCCATATGTCCCGAAGAACATAGGTA
Found at i:8459 original size:24 final size:20
Alignment explanation
Indices: 8406--8482 Score: 75
Period size: 20 Copynumber: 3.7 Consensus size: 20
8396 TTTCTCTTGA
8406 AGTGCATCGATGCATTCAAC
1 AGTGCATCGATGCATTCAAC
*
8426 AGTGCATCGATGCATTCTTTAGC
1 AGTGCATCGATGCATTC---AAC
* *
8449 ATGTGCATCGATGCAGT-ACC
1 A-GTGCATCGATGCATTCAAC
*
8469 CGTGCATCGATGCA
1 AGTGCATCGATGCA
8483 CAAATCACCT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.27
20 19 0.39
23 3 0.06
24 14 0.29
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (20 bp):
AGTGCATCGATGCATTCAAC
Found at i:11921 original size:21 final size:20
Alignment explanation
Indices: 11883--11921 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
11873 TTAATTTTGG
* *
11883 TAAAATAAAGGGATAAAATT
1 TAAAATAAAAGGAAAAAATT
11903 TAAAATTAAAAGGAAAAAA
1 TAAAA-TAAAAGGAAAAAA
11922 AGGAGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.21
Consensus pattern (20 bp):
TAAAATAAAAGGAAAAAATT
Found at i:12126 original size:6 final size:7
Alignment explanation
Indices: 12108--12132 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12098 TCAATTGTAA
12108 ATTTTTT
1 ATTTTTT
12115 ATTTTTT
1 ATTTTTT
12122 ATTTTTT
1 ATTTTTT
12129 ATTT
1 ATTT
12133 AAATTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:12416 original size:18 final size:18
Alignment explanation
Indices: 12382--12419 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
12372 TTAATTTAAG
12382 TAAAAAAAAGTTAAATTT
1 TAAAAAAAAGTTAAATTT
*
12400 TAAAATAAAA-TTGAATTT
1 TAAAA-AAAAGTTAAATTT
12418 TA
1 TA
12420 CTCAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TAAAAAAAAGTTAAATTT
Found at i:13364 original size:228 final size:229
Alignment explanation
Indices: 12897--13387 Score: 853
Period size: 228 Copynumber: 2.1 Consensus size: 229
12887 GTTATATTGT
* * * *
12897 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTCCACTGTGAAAACATATTTATTATTA
*
12962 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
*
13027 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTGTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
13092 AAAAAATTGAAACATAAATTACATAACTTCAAAA
196 AAAAAATTGAAACATAAATTACATAACTTCAAAA
* *
13126 AATA-TATATATCATTTTTATAAAAGTGTCCATATTTATTCCTCTGTGGAAAACATATTTATTAT
1 AA-AGTATATATCATTTTTATAAAAGTGTCCATACTTATTCCACTGT-GAAAACATATTTATTAT
13190 TATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCA
64 TATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCA
*
13254 AATAATTTTTTGTGTAAATAAAATTATT-AATTAATATTGTAGGTGGAAAACATGAAACACTATT
129 AATAATTTTGTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT
*
13318 AAAAAAAATTGAAACATAAATTACATAACTTTAAAA
194 AAAAAAAATTGAAACATAAATTACATAACTTCAAAA
13354 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
13388 GTATAAAAGT
Statistics
Matches: 248, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
227 1 0.00
228 102 0.41
229 70 0.28
230 75 0.30
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTCCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTGTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTCAAAA
Found at i:13750 original size:182 final size:181
Alignment explanation
Indices: 13456--13930 Score: 686
Period size: 181 Copynumber: 2.6 Consensus size: 181
13446 TCGATCCAAA
* * * * * *
13456 TAAAAAATGTGTTGATCCAAAACGATATAACATGTAAAACTATGACAAAACCGGTATA-GAAATG
1 TAAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGT-TACAAAATG
* * *
13520 ATAAAACCGGTAAAAC-ACTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACA
65 ATAAAACCGGTAAAACGA-TACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACA
* * *
13584 CTTCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTT
128 CTTCATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTT
* *
13638 TAAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAACCCGGTTACAAAATGA
1 TAAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGA
*
13703 TAAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTT
66 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTT
* ** *
13768 TATGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAATGTGTCGATACTTT
131 CATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTT
* * *
13819 AAAAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGG-TATCAAAATG
1 TAAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTA-CAAAATG
*
13883 ATAAAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
65 ATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
13931 CGTAAGTACG
Statistics
Matches: 264, Mismatches: 26, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
180 2 0.01
181 166 0.63
182 96 0.36
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (181 bp):
TAAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGA
TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTT
CATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTT
Found at i:13874 original size:20 final size:19
Alignment explanation
Indices: 13851--13897 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
13841 CGATATAACA
13851 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
13871 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
13891 GGTAAAA
1 GGTAAAA
13898 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:13899 original size:17 final size:19
Alignment explanation
Indices: 13860--13902 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
13850 AGGTAAAAAT
13860 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
13880 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
13897 ATGATA
1 ATGATA
13903 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:16133 original size:21 final size:21
Alignment explanation
Indices: 16109--16152 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
16099 AAGACAATCA
16109 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
16130 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
16151 AG
1 AG
16153 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:16251 original size:33 final size:33
Alignment explanation
Indices: 16186--16247 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
16176 AAATAGATGG
16186 AGTGGTGAAAGAAGTAGAGGTGTTGAAGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTGAAGGGTGA
* *
16219 AGTGGTGAAAGAAGTTGGGGTGTT-AAGGG
1 AGTGGTGAAAGAAGTAGAGGTGTTGAAGGG
16248 GTGATATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 5 0.19
33 22 0.81
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTGAAGGGTGA
Found at i:18065 original size:19 final size:19
Alignment explanation
Indices: 18041--18089 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
18031 AATGTAGGGT
18041 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
18060 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
18079 TATTTTTGTAT
1 TAATTTTGTAT
18090 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:18699 original size:198 final size:198
Alignment explanation
Indices: 18208--18978 Score: 1427
Period size: 198 Copynumber: 3.9 Consensus size: 198
18198 CAATATGACC
* *
18208 AACAGGGTGCAACCATAAAGTGTCGATCAATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
*
18273 CCAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
18338 GAATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
18403 TGGAA
194 TGGAA
*
18408 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
18473 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
18538 AATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATA-TTTTGTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
18602 GGAA
195 GGAA
18606 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
18671 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* * *
18736 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTAGTGTTGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAATG
18801 GAA
196 GAA
* *
18804 AACAGGGTGCACCCATAAAGTGTTGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
18869 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
18934 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
18979 CTAATTTAAA
Statistics
Matches: 558, Mismatches: 12, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
197 16 0.03
198 370 0.66
199 113 0.20
200 59 0.11
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAATG
GAA
Found at i:21010 original size:10 final size:9
Alignment explanation
Indices: 20975--21073 Score: 81
Period size: 10 Copynumber: 10.3 Consensus size: 9
20965 GCTGCTGGAA
*
20975 ACCGGTTTA
1 ACCGGTTTG
*
20984 ACCGGTTTTCA
1 ACCGG-TTT-G
20995 ACCGGTTCTG
1 ACCGGTT-TG
21005 ACCGGTTTG
1 ACCGGTTTG
*
21014 ACCGGTTTCA
1 ACCGGTTT-G
*
21024 ACCGGTTCG
1 ACCGGTTTG
21033 AACCGGTTTG
1 -ACCGGTTTG
*
21043 ACCGGTCTG
1 ACCGGTTTG
*
21052 AATCGGTTTG
1 -ACCGGTTTG
*
21062 ACCGGTCTG
1 ACCGGTTTG
21071 ACC
1 ACC
21074 CGACCCGACC
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
9 33 0.45
10 34 0.46
11 7 0.09
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:21019 original size:19 final size:19
Alignment explanation
Indices: 20976--21073 Score: 78
Period size: 19 Copynumber: 5.1 Consensus size: 19
20966 CTGCTGGAAA
* * *
20976 CCGGTTTAACCGGTTTTCAA
1 CCGGTTTGACCGGTTCT-GA
20996 CCGGTTCTGACCGGTT-TGA
1 CCGGTT-TGACCGGTTCTGA
*
21015 CCGGTTTCAACCGGTTC-GAA
1 CCGGTTT-GACCGGTTCTG-A
21035 CCGGTTTGACCGG-TCTGAA
1 CCGGTTTGACCGGTTCTG-A
*
21054 TCGGTTTGACCGG-TCTGA
1 CCGGTTTGACCGGTTCTGA
21072 CC
1 CC
21074 CGACCCGACC
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.07
19 39 0.58
20 15 0.22
21 8 0.12
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.30
Consensus pattern (19 bp):
CCGGTTTGACCGGTTCTGA
Found at i:21037 original size:29 final size:30
Alignment explanation
Indices: 20974--21073 Score: 118
Period size: 29 Copynumber: 3.4 Consensus size: 30
20964 GGCTGCTGGA
*
20974 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
21005 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
* * *
21033 AACCGGTTTGACCGGTCTGAATCGGTT-TG
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
*
21062 -ACCGGTCTGACC
1 AACCGGTTTGACC
21074 CGACCCGACC
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.19
29 37 0.60
30 13 0.21
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:21080 original size:5 final size:5
Alignment explanation
Indices: 21070--21134 Score: 58
Period size: 5 Copynumber: 11.8 Consensus size: 5
21060 TGACCGGTCT
* *
21070 GACCC GACCC GACCGTT GACCC GACCC GACCGTT GACCC GACCC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACC--C GACCC GACCC GACCC
21119 GACCGTC GACCC GACC
1 GACC--C GACCC GACC
21135 GTTGACCGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
5 37 0.74
7 13 0.26
ACGTcount: A:0.18, C:0.51, G:0.23, T:0.08
Consensus pattern (5 bp):
GACCC
Found at i:21091 original size:17 final size:17
Alignment explanation
Indices: 21069--21141 Score: 105
Period size: 17 Copynumber: 4.3 Consensus size: 17
21059 TTGACCGGTC
21069 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
21086 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
21103 TGACCCGACCCGACC--
1 TGACCCGACCCGACCGT
*
21118 CGACCGTCGACCCGACCGT
1 TGACC--CGACCCGACCGT
21137 TGACC
1 TGACC
21142 GTTGACCGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.08
17 42 0.84
19 4 0.08
ACGTcount: A:0.18, C:0.48, G:0.23, T:0.11
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:21092 original size:12 final size:12
Alignment explanation
Indices: 21092--21155 Score: 69
Period size: 12 Copynumber: 5.3 Consensus size: 12
21082 CCGTTGACCC
21092 GACCCGACCGTT
1 GACCCGACCGTT
*
21104 GACCCGACC--C
1 GACCCGACCGTT
*
21114 GACCCGACCGTC
1 GACCCGACCGTT
21126 GACCCGACCGTT
1 GACCCGACCGTT
*
21138 GACCGTTGACCGTT
1 GACC--CGACCGTT
21152 GACC
1 GACC
21156 GTTGACTTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
10 9 0.20
12 25 0.56
14 11 0.24
ACGTcount: A:0.17, C:0.44, G:0.25, T:0.14
Consensus pattern (12 bp):
GACCCGACCGTT
Found at i:21096 original size:22 final size:22
Alignment explanation
Indices: 21087--21134 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
21077 CCCGACCGTT
*
21087 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTCGACCC
21109 GACCCGACCCGACCGTCGACCC
1 GACCCGACCCGACCGTCGACCC
21131 GACC
1 GACC
21135 GTTGACCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.52, G:0.23, T:0.06
Consensus pattern (22 bp):
GACCCGACCCGACCGTCGACCC
Found at i:21141 original size:7 final size:7
Alignment explanation
Indices: 21131--21161 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
21121 CCGTCGACCC
21131 GACCGTT
1 GACCGTT
21138 GACCGTT
1 GACCGTT
21145 GACCGTT
1 GACCGTT
21152 GACCGTT
1 GACCGTT
21159 GAC
1 GAC
21162 TTTCTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:22102 original size:31 final size:31
Alignment explanation
Indices: 22031--22151 Score: 102
Period size: 31 Copynumber: 3.9 Consensus size: 31
22021 CTAATGTGAC
* * *
22031 TCTTAGGTAGGCTCTGCGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTGCGGCCCTAAGATCTT
** *
22062 TCTCGGGTAGGCCCTGCGGCCCTAAGATGTT
1 TCTTAGGTAGGCCCTGCGGCCCTAAGATCTT
** * *
22093 TCTTAGGTAGGCCCCACGGCCCCGAA-ATCTA
1 TCTTAGGTAGGCCCTGCGG-CCCTAAGATCTT
* *
22124 TCTTGGGTAGGCTCT-CAGGCCCTAAGAT
1 TCTTAGGTAGGCCCTGC-GGCCCTAAGAT
22152 GTTCCCTTAG
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
30 6 0.09
31 59 0.84
32 5 0.07
ACGTcount: A:0.17, C:0.29, G:0.28, T:0.26
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTGCGGCCCTAAGATCTT
Found at i:22102 original size:62 final size:62
Alignment explanation
Indices: 22031--22154 Score: 153
Period size: 62 Copynumber: 2.0 Consensus size: 62
22021 CTAATGTGAC
* ** * *
22031 TCTTAGGTAGGCTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTT
* *
22093 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGTT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTT
22155 CCCTTAGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
61 1 0.02
62 51 0.96
63 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.27
Consensus pattern (62 bp):
TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTT
Found at i:28354 original size:9 final size:9
Alignment explanation
Indices: 28340--28423 Score: 69
Period size: 10 Copynumber: 8.8 Consensus size: 9
28330 GGCTGCTGGA
28340 AACCGGTTT
1 AACCGGTTT
28349 AACCGGTTTT
1 AACCGG-TTT
28359 CAACCGGTTT
1 -AACCGGTTT
*
28369 GACCGGTTT
1 AACCGGTTT
*
28378 CAACCGGTTCG
1 -AACCGGTT-T
28389 AACCGGTTT
1 AACCGGTTT
* *
28398 GACCGGTCTG
1 AACCGGT-TT
*
28408 AATCGGTTT
1 AACCGGTTT
*
28417 GACCGGT
1 AACCGGT
28424 CTGACCCGAC
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
9 26 0.44
10 27 0.46
11 6 0.10
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.30
Consensus pattern (9 bp):
AACCGGTTT
Found at i:28365 original size:20 final size:20
Alignment explanation
Indices: 28340--28397 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
28330 GGCTGCTGGA
28340 AACCGGTTTAACCGGTTTTC
1 AACCGGTTTAACCGGTTTTC
*
28360 AACCGGTTTGACCGG-TTTC
1 AACCGGTTTAACCGGTTTTC
*
28379 AACCGGTTCGAACCGGTTT
1 AACCGGTT-TAACCGGTTT
28398 GACCGGTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.36
20 19 0.58
21 2 0.06
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (20 bp):
AACCGGTTTAACCGGTTTTC
Found at i:28385 original size:10 final size:10
Alignment explanation
Indices: 28340--28397 Score: 68
Period size: 9 Copynumber: 5.9 Consensus size: 10
28330 GGCTGCTGGA
28340 AACCGGTTT-
1 AACCGGTTTC
28349 AACCGGTTTTC
1 AACCGG-TTTC
28360 AACCGGTTT-
1 AACCGGTTTC
*
28369 GACCGGTTTC
1 AACCGGTTTC
28379 AACCGG-TTC
1 AACCGGTTTC
28388 GAACCGGTTT
1 -AACCGGTTT
28398 GACCGGTCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 17 0.40
10 17 0.40
11 8 0.19
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (10 bp):
AACCGGTTTC
Found at i:28392 original size:29 final size:28
Alignment explanation
Indices: 28341--28404 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 28
28331 GCTGCTGGAA
28341 ACCGGTTTAACCGGTTTTCAACCGGTTTG
1 ACCGGTTTAACCGG-TTTCAACCGGTTTG
28370 ACCGGTTTCAACCGG-TTCGAACCGGTTTG
1 ACCGGTTT-AACCGGTTTC-AACCGGTTTG
28399 ACCGGT
1 ACCGGT
28405 CTGAATCGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
28 3 0.09
29 24 0.73
30 6 0.18
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.30
Consensus pattern (28 bp):
ACCGGTTTAACCGGTTTCAACCGGTTTG
Found at i:28402 original size:19 final size:19
Alignment explanation
Indices: 28361--28423 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
28351 CCGGTTTTCA
* *
28361 ACCGGTTTG-ACCGGTTTCA
1 ACCGGTTCGAACCGGTTT-G
28380 ACCGGTTCGAACCGGTTTG
1 ACCGGTTCGAACCGGTTTG
*
28399 ACCGG-TCTGAATCGGTTTG
1 ACCGGTTC-GAACCGGTTTG
28418 ACCGGT
1 ACCGGT
28424 CTGACCCGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
18 2 0.05
19 28 0.74
20 8 0.21
ACGTcount: A:0.16, C:0.25, G:0.30, T:0.29
Consensus pattern (19 bp):
ACCGGTTCGAACCGGTTTG
Found at i:28414 original size:29 final size:29
Alignment explanation
Indices: 28360--28429 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
28350 ACCGGTTTTC
*
28360 AACCGGTTTGACCGGTTTCAACCGGTTCG
1 AACCGGTTTGACCGGTCTCAACCGGTTCG
* * *
28389 AACCGGTTTGACCGGTCTGAATCGGTTTG
1 AACCGGTTTGACCGGTCTCAACCGGTTCG
*
28418 -ACCGGTCTGACC
1 AACCGGTTTGACC
28430 CGACCCGACC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 11 0.31
29 25 0.69
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (29 bp):
AACCGGTTTGACCGGTCTCAACCGGTTCG
Found at i:28436 original size:5 final size:5
Alignment explanation
Indices: 28426--28490 Score: 58
Period size: 5 Copynumber: 11.8 Consensus size: 5
28416 TGACCGGTCT
* *
28426 GACCC GACCC GACCGTT GACCC GACCC GACCGTT GACCC GACCC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACC--C GACCC GACCC GACCC
28475 GACCGTC GACCC GACC
1 GACC--C GACCC GACC
28491 GTTGACCGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
5 37 0.74
7 13 0.26
ACGTcount: A:0.18, C:0.51, G:0.23, T:0.08
Consensus pattern (5 bp):
GACCC
Found at i:28447 original size:17 final size:17
Alignment explanation
Indices: 28425--28497 Score: 105
Period size: 17 Copynumber: 4.3 Consensus size: 17
28415 TTGACCGGTC
28425 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
28442 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
28459 TGACCCGACCCGACC--
1 TGACCCGACCCGACCGT
*
28474 CGACCGTCGACCCGACCGT
1 TGACC--CGACCCGACCGT
28493 TGACC
1 TGACC
28498 GTTGACCGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.08
17 42 0.84
19 4 0.08
ACGTcount: A:0.18, C:0.48, G:0.23, T:0.11
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:28452 original size:22 final size:22
Alignment explanation
Indices: 28443--28490 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
28433 CCCGACCGTT
*
28443 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTCGACCC
28465 GACCCGACCCGACCGTCGACCC
1 GACCCGACCCGACCGTCGACCC
28487 GACC
1 GACC
28491 GTTGACCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.52, G:0.23, T:0.06
Consensus pattern (22 bp):
GACCCGACCCGACCGTCGACCC
Found at i:28497 original size:7 final size:7
Alignment explanation
Indices: 28487--28538 Score: 104
Period size: 7 Copynumber: 7.4 Consensus size: 7
28477 CCGTCGACCC
28487 GACCGTT
1 GACCGTT
28494 GACCGTT
1 GACCGTT
28501 GACCGTT
1 GACCGTT
28508 GACCGTT
1 GACCGTT
28515 GACCGTT
1 GACCGTT
28522 GACCGTT
1 GACCGTT
28529 GACCGTT
1 GACCGTT
28536 GAC
1 GAC
28539 TTTCTTTGAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.27
Consensus pattern (7 bp):
GACCGTT
Found at i:29476 original size:63 final size:63
Alignment explanation
Indices: 29408--29531 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
29398 CTAATGTGAC
* ** * *
29408 TCTTAGGTAGGCTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTGT
* *
29471 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGT
29532 TCCCTTAGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.96
64 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.26
Consensus pattern (63 bp):
TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTGT
Found at i:35752 original size:10 final size:9
Alignment explanation
Indices: 35717--35815 Score: 81
Period size: 10 Copynumber: 10.3 Consensus size: 9
35707 GCTGCTGGAA
*
35717 ACCGGTTTA
1 ACCGGTTTG
*
35726 ACCGGTTTTCA
1 ACCGG-TTT-G
35737 ACCGGTTCTG
1 ACCGGTT-TG
35747 ACCGGTTTG
1 ACCGGTTTG
*
35756 ACCGGTTTCA
1 ACCGGTTT-G
*
35766 ACCGGTTCG
1 ACCGGTTTG
35775 AACCGGTTTG
1 -ACCGGTTTG
*
35785 ACCGGTCTG
1 ACCGGTTTG
*
35794 AATCGGTTTG
1 -ACCGGTTTG
*
35804 ACCGGTCTG
1 ACCGGTTTG
35813 ACC
1 ACC
35816 CGACCCGACC
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
9 33 0.45
10 34 0.46
11 7 0.09
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.29
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:35761 original size:19 final size:19
Alignment explanation
Indices: 35718--35815 Score: 78
Period size: 19 Copynumber: 5.1 Consensus size: 19
35708 CTGCTGGAAA
* * *
35718 CCGGTTTAACCGGTTTTCAA
1 CCGGTTTGACCGGTTCT-GA
35738 CCGGTTCTGACCGGTT-TGA
1 CCGGTT-TGACCGGTTCTGA
*
35757 CCGGTTTCAACCGGTTC-GAA
1 CCGGTTT-GACCGGTTCTG-A
35777 CCGGTTTGACCGG-TCTGAA
1 CCGGTTTGACCGGTTCTG-A
*
35796 TCGGTTTGACCGG-TCTGA
1 CCGGTTTGACCGGTTCTGA
35814 CC
1 CC
35816 CGACCCGACC
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.07
19 39 0.58
20 15 0.22
21 8 0.12
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.30
Consensus pattern (19 bp):
CCGGTTTGACCGGTTCTGA
Found at i:35779 original size:29 final size:30
Alignment explanation
Indices: 35716--35815 Score: 118
Period size: 29 Copynumber: 3.4 Consensus size: 30
35706 GGCTGCTGGA
*
35716 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
35747 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
* * *
35775 AACCGGTTTGACCGGTCTGAATCGGTT-TG
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
*
35804 -ACCGGTCTGACC
1 AACCGGTTTGACC
35816 CGACCCGACC
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.19
29 37 0.60
30 13 0.21
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:35822 original size:5 final size:5
Alignment explanation
Indices: 35812--35862 Score: 57
Period size: 5 Copynumber: 9.4 Consensus size: 5
35802 TGACCGGTCT
*
35812 GACCC GACCC GACCGTT GACCC GACCC GACCC GACCC GACCGTC GACCC
1 GACCC GACCC GACC--C GACCC GACCC GACCC GACCC GACC--C GACCC
35861 GA
1 GA
35863 TCGTTGACCG
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 31 0.77
7 9 0.22
ACGTcount: A:0.20, C:0.51, G:0.24, T:0.06
Consensus pattern (5 bp):
GACCC
Found at i:35884 original size:14 final size:14
Alignment explanation
Indices: 35865--35892 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35855 CGACCCGATC
35865 GTTGACCGTTGACT
1 GTTGACCGTTGACT
35879 GTTGACCGTTGACT
1 GTTGACCGTTGACT
35893 TTCTTTGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.29, T:0.36
Consensus pattern (14 bp):
GTTGACCGTTGACT
Found at i:36829 original size:63 final size:63
Alignment explanation
Indices: 36761--36884 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
36751 CTAATGTGAC
* ** * *
36761 TCTTAGGTAGGCTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTGT
* *
36824 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGT
36885 TCCCTTAGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.96
64 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.26
Consensus pattern (63 bp):
TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTGT
Found at i:37646 original size:12 final size:12
Alignment explanation
Indices: 37629--37725 Score: 97
Period size: 12 Copynumber: 7.9 Consensus size: 12
37619 GGTCGCAGAA
*
37629 GATGAAGCTGAC
1 GATGAAGATGAC
37641 GATGAAGATGAC
1 GATGAAGATGAC
*
37653 GATGATGATGAC
1 GATGAAGATGAC
*
37665 GATGAAGCTGAC
1 GATGAAGATGAC
*
37677 GATAAAGATGATGAC
1 GAT---GAAGATGAC
*
37692 GATGATGATGAC
1 GATGAAGATGAC
*
37704 GATGATGATGA-
1 GATGAAGATGAC
*
37715 GATGATGATGA
1 GATGAAGATGA
37726 TCCAAACAAG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
11 11 0.14
12 55 0.72
15 10 0.13
ACGTcount: A:0.37, C:0.08, G:0.33, T:0.22
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:37650 original size:6 final size:6
Alignment explanation
Indices: 37626--37725 Score: 58
Period size: 6 Copynumber: 16.3 Consensus size: 6
37616 AGCGGTCGCA
* * * * * *
37626 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * * * *
37674 GACGAT AAAGAT GATGACGAT GATGAT GACGAT GATGAT G-AGAT GATGAT
1 GAAGAT GAAGAT GA--A-GAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
37724 GA
1 GA
37726 TCCAAACAAG
Statistics
Matches: 71, Mismatches: 19, Indels: 8
0.72 0.19 0.08
Matches are distributed among these distances:
5 4 0.06
6 61 0.86
8 1 0.01
9 5 0.07
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:37661 original size:3 final size:3
Alignment explanation
Indices: 37641--37726 Score: 75
Period size: 3 Copynumber: 29.0 Consensus size: 3
37631 TGAAGCTGAC
* * * * * * * *
37641 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GAC GAT AAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
37689 GAC GAT GAT GAT GAC GAT GAT GAT GA- GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
37727 CCAAACAAGT
Statistics
Matches: 62, Mismatches: 20, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:38952 original size:16 final size:16
Alignment explanation
Indices: 38920--38953 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38910 TATCCACAAC
* *
38920 AAAGTGTCGATTTAAA
1 AAAGTGTCGACTGAAA
38936 AAAGTGTCGACTGAAA
1 AAAGTGTCGACTGAAA
38952 AA
1 AA
38954 TGTAATAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (16 bp):
AAAGTGTCGACTGAAA
Found at i:39293 original size:21 final size:22
Alignment explanation
Indices: 39247--39298 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
39237 AAATTACATA
*
39247 ACTTTTAAAAAAAGTATCGATC
1 ACTTTTAATAAAAGTATCGATC
*
39269 -CTTTTAATAAAAGTATGGA-C
1 ACTTTTAATAAAAGTATCGATC
*
39289 ACTTTCAATA
1 ACTTTTAATA
39299 TAATAGGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (22 bp):
ACTTTTAATAAAAGTATCGATC
Found at i:39342 original size:23 final size:23
Alignment explanation
Indices: 39311--39371 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
39301 ATAGGTAAAA
*
39311 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
39334 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
39357 ATATAATGTAATAGG
1 ATATAATGTAATAGG
39372 CAGTGGTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:39381 original size:23 final size:23
Alignment explanation
Indices: 39311--39383 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
39301 ATAGGTAAAA
* *
39311 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
* *
39334 ATATAATGTAATATGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
* *
39357 ATATAATGTAATAGGCAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
39380 ATAT
1 ATAT
39384 TGTAAAGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
23 40 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:39769 original size:23 final size:23
Alignment explanation
Indices: 39738--39810 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
39728 ATAGGTAAAA
*
39738 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
39761 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
39784 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
39807 ATAT
1 ATAT
39811 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:40148 original size:21 final size:21
Alignment explanation
Indices: 40109--40148 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
40099 CATATCTTTA
*
40109 AAAAAAGTATCGATCCTTTTT
1 AAAAAAGTATCGAACCTTTTT
40130 AAAAAAGTAT-GAACACTTT
1 AAAAAAGTATCGAAC-CTTT
40149 CAATAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAAAAGTATCGAACCTTTTT
Found at i:40224 original size:22 final size:23
Alignment explanation
Indices: 40165--40236 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
40155 ATAGGTAAAA
*
40165 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
40188 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
40211 ATA-AATTTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
40233 ATAT
1 ATAT
40237 TGTAAAGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 18 0.44
23 23 0.56
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:40224 original size:426 final size:430
Alignment explanation
Indices: 39109--40998 Score: 3451
Period size: 427 Copynumber: 4.4 Consensus size: 430
39099 GTTAATGTTG
* *
39109 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
39173 ATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTA-TTAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTAAAAAAATTGAAACAT
* *
39237 AAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTAAT-AAAAGTATGGACACTTTCAATATA
130 AAATTACATATC-TTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
*
39301 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTTATATAATGT
194 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
*
39366 AATAGGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACT
259 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACT
39431 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
324 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
39496 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
389 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
39538 TTAAATTAAAAATTCTAAATA-T-TTTTATAAAATATC-AAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
39600 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
39665 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
39730 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
*
39795 TAGGTAGTGGTTATATTGTAAAGTATCTAT-CATTTTATAAAAGTGTCTATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
*
39859 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGAC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
39924 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
39964 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
40029 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
*
40094 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTA-AAAAAGTATGAACACTTTCAATA-AAT
131 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
*
40157 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA-AATTTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
40221 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
40286 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
40351 GTCTAATGATTTA-TTTTTACGTTACG--ATATA-TATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
40387 TTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
40451 ATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT-AAAAAAATTGAAACAT
40516 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
130 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
40581 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAATGTA
195 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
40646 ATAGGTAGTGGTTATATTGTAAAGTACCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
260 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
40711 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
325 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
40776 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
390 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
40817 TTAAATTAAAAATTCTTAATATTATTTTAT-AAATATCAAAACAATCAAAT-A-TTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
40879 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATG-AACATACTTAAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT--AAAAAAATTGAAACA
*
40943 TAAATTACATATCTTTAAAAAAAGTATCGAT-CATTTTATAAAAAGTATGGACACTT
129 TAAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
40999 GCAACATATT
Statistics
Matches: 1423, Mismatches: 21, Indels: 36
0.96 0.01 0.02
Matches are distributed among these distances:
422 104 0.07
423 66 0.05
424 27 0.02
425 59 0.04
426 383 0.27
427 432 0.30
428 145 0.10
429 142 0.10
430 44 0.03
431 21 0.01
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (430 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:40621 original size:23 final size:23
Alignment explanation
Indices: 40590--40662 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
40580 ATAGGTAAAA
*
40590 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
40613 ATATAATGTAATAAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
40636 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
40659 ATAT
1 ATAT
40663 TGTAAAGTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:40764 original size:853 final size:853
Alignment explanation
Indices: 39109--40998 Score: 3444
Period size: 853 Copynumber: 2.2 Consensus size: 853
39099 GTTAATGTTG
* *
39109 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
39173 ATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTA-TTAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTAAAAAAATTGAAACAT
*
39237 AAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTAATAAAAGTATGGACACTTTCAATATAA
130 AAATTACATATC-TTTAAAAAAAGTATCGATCCTTTTAA-AAAAGTATGGACACTTTCAATATAA
*
39302 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTTATATAATGTA
193 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
39367 ATAGGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
258 ATAGGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
39432 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
323 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
39497 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATATTT
388 CGTCTAATGATTTATTTTTTACGTTACGA-ATATATTATTATTAAATTAAAAATTCTAAATATTT
*
39562 TTATAAAATATCAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGG
452 TTATAAAATATCAAACAATCAAATAATTTTTTGTGCAAATAAAATTATTAAATTAATATTGTAGG
39627 TGGAAAACATGAAACATACTTAAAAAAATTGAAACATAAATTACATATCTTTAAAAAAAGTATCG
517 TGGAAAACATGAAACATACTTAAAAAAATTGAAACATAAATTACATATCTTTAAAAAAAGTATCG
39692 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
582 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
* *
39757 GCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATC
647 GCTTATATAATGTAATAAGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTACC
39822 TATCATTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTT
712 TATCATTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTT
39887 GAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTACGA
777 GAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTACGA
39952 TATATATTATTA
842 TATATATTATTA
39964 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
40029 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
*
40094 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTAAAAAAGTATGAACACTTTCAATA-AATA
131 AATTACATATCTTTAAAAAAAGTATCGATCC-TTTTAAAAAAGTATGGACACTTTCAATATAATA
*
40158 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA-AATTTAAT
195 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
*
40222 AGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTG
260 AGGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTG
40287 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
325 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
40352 TCTAATGATTTA-TTTTTACGTTACG-ATATA-TATTATTAAATT-AAAATTCTAAATATTATTT
390 TCTAATGATTTATTTTTTACGTTACGAATATATTATTATTAAATTAAAAATTCTAAATA-T-TTT
40413 TATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATAAAATTATTAAATTAATATTGTAGG
453 TATAAAATATC-AAACAATCAAATAATTTTTTGTGCAAATAAAATTATTAAATTAATATTGTAGG
40478 TGGAAAACATGAAACATACTTAAAAAAAATTGAAACATAAATTACATATCTTTAAAAAAAGTATC
517 TGGAAAACATGAAACATACTT-AAAAAAATTGAAACATAAATTACATATCTTTAAAAAAAGTATC
40543 GATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
581 GATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAG
40608 CGCTTATATAATGTAATAAGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTAC
646 CGCTTATATAATGTAATAAGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTAC
*
40673 CTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTT
711 CTAT-CATTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTT
*
40738 TTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTAC
775 TTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTAC
40803 GATATATATTATTA
840 GATATATATTATTA
*
40817 TTAAATTAAAAATTCTTAATATTATTTTAT-AAATATCAAAACAATCAAAT-A-TTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
40879 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATG-AACATACTTAAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT--AAAAAAATTGAAACA
*
40943 TAAATTACATATCTTTAAAAAAAGTATCGATCATTTTATAAAAAGTATGGACACTT
129 TAAATTACATATCTTTAAAAAAAGTATCGATCCTTTTA-AAAAAGTATGGACACTT
40999 GCAACATATT
Statistics
Matches: 1008, Mismatches: 16, Indels: 26
0.96 0.02 0.02
Matches are distributed among these distances:
848 13 0.01
849 22 0.02
850 73 0.07
851 137 0.14
852 208 0.21
853 314 0.31
854 59 0.06
855 50 0.05
856 132 0.13
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (853 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
AATTACATATCTTTAAAAAAAGTATCGATCCTTTTAAAAAAGTATGGACACTTTCAATATAATAG
GTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATA
GGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGTGG
AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
CTAATGATTTATTTTTTACGTTACGAATATATTATTATTAAATTAAAAATTCTAAATATTTTTAT
AAAATATCAAACAATCAAATAATTTTTTGTGCAAATAAAATTATTAAATTAATATTGTAGGTGGA
AAACATGAAACATACTTAAAAAAATTGAAACATAAATTACATATCTTTAAAAAAAGTATCGATCC
TTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTT
ATATAATGTAATAAGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTACCTATC
ATTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGT
GAGTTTTAAGATATTAATTTAGTAATTATAGACGTCTAATGATTTATTTTTTACGTTACGATATA
TATTATTA
Found at i:42874 original size:16 final size:16
Alignment explanation
Indices: 42840--42874 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
42830 TAATATCCAC
* *
42840 AAAAAGTGTCGATTTA
1 AAAAAGTGTCGACTGA
42856 AAAAAGTGTCGACTGA
1 AAAAAGTGTCGACTGA
42872 AAA
1 AAA
42875 TGTAATAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.23
Consensus pattern (16 bp):
AAAAAGTGTCGACTGA
Found at i:43205 original size:20 final size:21
Alignment explanation
Indices: 43160--43210 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
43150 AAATTACATA
*
43160 ACTTTTAAAAAAAGTATCGATC
1 ACTTTT-AATAAAGTATCGATC
*
43182 -CTTTTAATAAAGTATGGA-C
1 ACTTTTAATAAAGTATCGATC
*
43201 ACTTTCAATA
1 ACTTTTAATA
43211 TAATAGGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 19 0.76
21 5 0.20
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (21 bp):
ACTTTTAATAAAGTATCGATC
Found at i:43665 original size:23 final size:23
Alignment explanation
Indices: 43639--43710 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
43629 ATAGGTAAAA
*
43639 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
43662 ATATAATGTAATA-GTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
43684 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
43707 ATAT
1 ATAT
43711 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 20 0.48
23 22 0.52
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:43688 original size:22 final size:22
Alignment explanation
Indices: 43639--43697 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
43629 ATAGGTAAAA
*
43639 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATA-GTAGCGCTT
* *
43662 ATATAATGTAATAGTATCGTTT
1 ATATAATGTAATAGTAGCGCTT
43684 ATATAATGTAATAG
1 ATATAATGTAATAG
43698 GTAGTGGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 21 0.64
23 12 0.36
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (22 bp):
ATATAATGTAATAGTAGCGCTT
Found at i:43694 original size:45 final size:42
Alignment explanation
Indices: 43639--43721 Score: 112
Period size: 45 Copynumber: 1.9 Consensus size: 42
43629 ATAGGTAAAA
*
43639 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT--TGTAA-AGTATCGTTT
* *
43684 ATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATC
1 ATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATC
43722 TATCATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 6 0.17
43 5 0.14
45 24 0.69
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (42 bp):
ATATAATGTAATAGGTAGCGCTTATATTGTAAAGTATCGTTT
Found at i:43977 original size:416 final size:425
Alignment explanation
Indices: 43023--44457 Score: 2393
Period size: 417 Copynumber: 3.4 Consensus size: 425
43013 GTTAATGTTG
* *
43023 TTAAATT-TAAATTCTAAATA-TATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
43086 ATGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTA-TTAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTAAAAAAATTGAAACAT
* *
43150 AAATTACATAACTTTTAAAAAAAGTATCGATCCTTTTAAT-AAAGTATGGACACTTTCAATATAA
130 AAATTACATATC-TTTAAAAAAAGTATCGATCCTTTTTATAAAAGTATGGACACTTTC-ATATAA
*
43214 TAGGTAAAAATATGATGTAATAGGTAGCGC-T-TATATGTAATATGTATCG-TT-T-TAATGT-A
193 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATATGTAATAGGTATCGTTTATATAATGTAA
*
43273 TAGGCAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
258 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTAT-AAAGTGTCTATACTTTTTTCACTGT
43338 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
322 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
43403 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
387 GTCTAATGATTTATTTTTTACGTTACGATATATA-TATTA
43443 TTAAATTAAAAATTCTAAATATTATTTTAT-AAATATCAAAACAATC-AATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
43506 ATGAAATTATTAAATT-ATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
43570 AATTACATATCTTT-AAAAAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCA-ATAATA
131 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTAT-AAAAGTATGGACACTTTCATATAATA
43632 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATA-GTATCGTTTATATAATGTAAT
195 GGTAAAAATATGATGTAATAGGTAGCGCTTATAT-ATGTAATAGGTATCGTTTATATAATGTAAT
*
43696 AGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAGTGTCTATAC-TTTTTCACTGTGG
259 AGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAGTGTCTATACTTTTTTCACTGTGG
*
43760 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT-ATTTAGTAATTATAGACGT
324 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
43824 CTAATGATTTA-TTTTTACGTTACGATATATATATTA
389 CTAATGATTTATTTTTTACGTTACGATATATATATTA
43860 TTAAATTAAAAATTCTAAATATTA-TTTAT-AAA-ATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
43922 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT-AAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
43986 AA-TACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAGTATGGACACTTTCATATAATAG
131 AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAGTATGGACACTTTCATATAATAG
44050 GTAAAAATATGATGTAATAGGTAGCGCTTATATATGTAATAGGTATCGTTTATATAATGTAATAG
196 GTAAAAATATGATGTAATAGGTAGCGCTTATATATGTAATAGGTATCGTTTATATAATGTAATAG
*
44115 GTAGT-G---TATTGTAAAGTACCTATCCTTTTTATAAAGTGTCTATATACTTTTTTCACTGTGG
261 GTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAGTGTC--TATACTTTTTTCACTGTGG
44176 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
324 AAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGT
*
44241 CTAAT-ATTTATTTTTTACGTTACGATATATTTA-TA
389 CTAATGATTTATTTTTTACGTTACGATATATATATTA
*
44276 TTAAATTAAAAATTCTTAATA-T-TTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
44339 ATGAAAATTATTAAATTAATA-TGTAGGTGGAAAACATGAAACATACTTAAAAAAAAATTG-AAC
66 ATG-AAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT--AAAAAAATTGAAAC
*
44402 -TAAATTACATATCTTTAAAAAAAGTATCGATCATTTTTATAAAAGTATGGACACTT
128 ATAAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAGTATGGACACTT
44458 GCAACATTAT
Statistics
Matches: 970, Mismatches: 14, Indels: 63
0.93 0.01 0.06
Matches are distributed among these distances:
413 32 0.03
415 34 0.04
416 230 0.24
417 256 0.26
418 72 0.07
419 146 0.15
420 107 0.11
421 47 0.05
422 46 0.05
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (425 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAGTATGGACACTTTCATATAATAG
GTAAAAATATGATGTAATAGGTAGCGCTTATATATGTAATAGGTATCGTTTATATAATGTAATAG
GTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAGTGTCTATACTTTTTTCACTGTGGAA
AACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCT
AATGATTTATTTTTTACGTTACGATATATATATTA
Found at i:44089 original size:22 final size:23
Alignment explanation
Indices: 44056--44118 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
44046 ATAGGTAAAA
*
44056 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
44079 ATAT-ATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
44101 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
44119 TGTATTGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 20 0.56
23 16 0.44
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:44866 original size:178 final size:176
Alignment explanation
Indices: 44497--44977 Score: 713
Period size: 179 Copynumber: 2.7 Consensus size: 176
44487 ACTGCTATCG
*
44497 GTATAAATATA-CAGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGT
1 GTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGT
* * * *
44561 GTCGGTACTTTATGTCCAGATTGTAAAAAAATATGTCGATACATCATCAAAAAGTGTCGACATTT
66 GTCGGTACTTTATGTCCAGATTGGAAGAAAATGTGTCGATACAT--TTAAAAAGTGTCGACATTT
* *
44626 ACATCGGAACTCATAATTATAATGTAATGATAATTTTGTAATATAACC
129 ACATCGGAACCCAGAATTATAATGTAATGATAATTTTGTAATATAACC
44674 GTATAAATATACCGGTTTTTATGCGCGAATA-GTCTACAACCTA-ATCGACACTTTTTAATATTG
1 GTATAAATATACCGG-TTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTG
44737 TGTCGGTAC-TTATGTCCAGATTGGAAGAAAATGTGTCGATACGATTTAAAAAGTGTCGACATTT
65 TGTCGGTACTTTATGTCCAGATTGGAAGAAAATGTGTCGATAC-ATTTAAAAAGTGTCGACATTT
*
44801 ACAACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAACC
129 ---ACATCGGAACCCAGAATTATAATGTAAT-GATAATTTTGTAATATAACC
* *
44853 GGTAT-AA-ATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATTG
1 -GTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTG
44916 TGTCGGTACTTTATGTCCAGATTGGAAGAAAAAAATGTGTCGATACCATTTAAAAAGTGTCG
65 TGTCGGTACTTTATGTCCAGATTGGAAG---AAAATGTGTCGATA-CATTTAAAAAGTGTCG
44978 GTAATTGTAA
Statistics
Matches: 279, Mismatches: 10, Indels: 24
0.89 0.03 0.08
Matches are distributed among these distances:
175 18 0.06
176 30 0.11
177 56 0.20
178 58 0.21
179 65 0.23
180 22 0.08
183 29 0.10
184 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (176 bp):
GTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGT
GTCGGTACTTTATGTCCAGATTGGAAGAAAATGTGTCGATACATTTAAAAAGTGTCGACATTTAC
ATCGGAACCCAGAATTATAATGTAATGATAATTTTGTAATATAACC
Found at i:47812 original size:272 final size:272
Alignment explanation
Indices: 47326--47869 Score: 1043
Period size: 272 Copynumber: 2.0 Consensus size: 272
47316 CATCATACTT
*
47326 AGCTCACATTACCATAAACAAACATGGCAGCAAGGTATTTAGCTCATTTTAGCTCAATATCATGA
1 AGCTCACATTACCATAAAAAAACATGGCAGCAAGGTATTTAGCTCATTTTAGCTCAATATCATGA
*
47391 ACTTACCTTGTTTCCTTGCACATATAGGTACAATGGAGTGTGATGCACGTTGAGGTAGGTTGGTG
66 ACTTACCTTGTTTCCTTGCACATATAGGTACAATGGAGTGTGATGCACGTTGAGGTAGCTTGGTG
*
47456 AATGATTTGGACGTCATATATAGCGCACAAACAGCTCACAAAGTACAAGGCAGCTCATGGAATGC
131 AATAATTTGGACGTCATATATAGCGCACAAACAGCTCACAAAGTACAAGGCAGCTCATGGAATGC
47521 TAAGGGAAGCTCGATTCAGCTGGAGAAGCTTCAGGCTAGCTAAACTTAGCTAGTTGGACTATTTG
196 TAAGGGAAGCTCGATTCAGCTGGAGAAGCTTCAGGCTAGCTAAACTTAGCTAGTTGGACTATTTG
47586 AAGCTGAGTTGC
261 AAGCTGAGTTGC
*
47598 AGCTCACATTACCATAAAAAAACATGGCAGCAAGGTATTTAGCTCGTTTTAGCTCAATATCATGA
1 AGCTCACATTACCATAAAAAAACATGGCAGCAAGGTATTTAGCTCATTTTAGCTCAATATCATGA
47663 ACTTACCTTGTTTCCTTGCACATATAGGTACAATGGAGTGTGATGCACGTTGAGGTAGCTTGGTG
66 ACTTACCTTGTTTCCTTGCACATATAGGTACAATGGAGTGTGATGCACGTTGAGGTAGCTTGGTG
*
47728 AATAATTTGGACGTCATATATAGTGCACAAACAGCTCACAAAGTACAAGGCAGCTCATGGAATGC
131 AATAATTTGGACGTCATATATAGCGCACAAACAGCTCACAAAGTACAAGGCAGCTCATGGAATGC
47793 TAAGGGAAGCTCGATTCAGCTGGAGAAGCTTCAGGCTAGCTAAACTTAGCTAGTTGGACTATTTG
196 TAAGGGAAGCTCGATTCAGCTGGAGAAGCTTCAGGCTAGCTAAACTTAGCTAGTTGGACTATTTG
47858 AAGCTGAGTTGC
261 AAGCTGAGTTGC
47870 TAAAAGTGAT
Statistics
Matches: 267, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
272 267 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (272 bp):
AGCTCACATTACCATAAAAAAACATGGCAGCAAGGTATTTAGCTCATTTTAGCTCAATATCATGA
ACTTACCTTGTTTCCTTGCACATATAGGTACAATGGAGTGTGATGCACGTTGAGGTAGCTTGGTG
AATAATTTGGACGTCATATATAGCGCACAAACAGCTCACAAAGTACAAGGCAGCTCATGGAATGC
TAAGGGAAGCTCGATTCAGCTGGAGAAGCTTCAGGCTAGCTAAACTTAGCTAGTTGGACTATTTG
AAGCTGAGTTGC
Found at i:51778 original size:11 final size:13
Alignment explanation
Indices: 51746--51775 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51736 TGGCCAAAGA
51746 TGAAAAGGTATGT
1 TGAAAAGGTATGT
51759 TGAAAAGGTATG-
1 TGAAAAGGTATGT
51771 TGAAA
1 TGAAA
51776 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:54928 original size:25 final size:25
Alignment explanation
Indices: 54894--54958 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
54884 TTATCATTAA
54894 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
54919 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
54944 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
54959 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:55335 original size:23 final size:23
Alignment explanation
Indices: 55304--55376 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
55294 ATAGGTAAAA
*
55304 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
55327 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
55350 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
55373 ATAT
1 ATAT
55377 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:55687 original size:25 final size:25
Alignment explanation
Indices: 55649--55698 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
55639 AAATCAATTA
*
55649 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
55674 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
55699 GAAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:56103 original size:18 final size:18
Alignment explanation
Indices: 56082--56118 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
56072 GTAATTGGAG
56082 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
56100 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
56118 T
1 T
56119 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:56126 original size:24 final size:24
Alignment explanation
Indices: 56074--56120 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
56064 TTTCATATGT
* *
56074 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
56098 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
56121 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:56433 original size:39 final size:39
Alignment explanation
Indices: 56390--56476 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
56380 TCCGATGCTC
* *
56390 ATCAAAATCCAAAGCTCATATGGTGCCAAGTAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
56429 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
56468 ATCAAAATC
1 ATCAAAATC
56477 TACAACTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:56928 original size:23 final size:23
Alignment explanation
Indices: 56897--56969 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
56887 ATAGGTAAAA
*
56897 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
56920 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
56943 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
56966 ATAT
1 ATAT
56970 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:57385 original size:23 final size:23
Alignment explanation
Indices: 57324--57386 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
57314 ATAGGTAAAA
* *
57324 ATATGATGTAATAGGCATCGCTT
1 ATATAATGTAATAGGTATCGCTT
*
57347 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGCTT
57370 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
57387 GTGGTTATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGCTT
Found at i:57394 original size:23 final size:23
Alignment explanation
Indices: 57324--57396 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
57314 ATAGGTAAAA
* * *
57324 ATATGATGTAATAGGCATCGCTT
1 ATATAATGTAATAGGTATCGGTT
*
57347 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
57370 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
57393 ATAT
1 ATAT
57397 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 44 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:57783 original size:21 final size:21
Alignment explanation
Indices: 57757--57827 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
57747 TAAAAATATG
57757 ATGTAATAGGTAGCGCTTATA
1 ATGTAATAGGTAGCGCTTATA
* *
57778 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCG-CT-TATA
* *
57801 ATGTAATAGGTAGTGGTTATA
1 ATGTAATAGGTAGCGCTTATA
*
57822 TTGTAA
1 ATGTAA
57828 AGTATCTATC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
21 23 0.55
22 2 0.05
23 17 0.40
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (21 bp):
ATGTAATAGGTAGCGCTTATA
Found at i:57804 original size:23 final size:22
Alignment explanation
Indices: 57752--57813 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
57742 ATAGGTAAAA
*
57752 ATATGATGTAATAGGTAGCGCT
1 ATATAATGTAATAGGTAGCGCT
* *
57774 -TATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCG-CT
57796 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
57814 TGGTTATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 17 0.50
22 1 0.03
23 16 0.47
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (22 bp):
ATATAATGTAATAGGTAGCGCT
Found at i:57820 original size:23 final size:23
Alignment explanation
Indices: 57752--57822 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
57742 ATAGGTAAAA
* * *
57752 ATATGATGTAATAGGTAG-CGCT
1 ATATAATGTAATAGGTAGTGGTT
*
57774 -TATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GGTT
57796 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGGTT
57819 ATAT
1 ATAT
57823 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
21 15 0.38
22 1 0.03
23 23 0.57
24 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGGTT
Found at i:58210 original size:23 final size:23
Alignment explanation
Indices: 58179--58251 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
58169 ATAGGTAAAA
*
58179 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
58202 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
58225 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
58248 ATAT
1 ATAT
58252 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:58255 original size:429 final size:430
Alignment explanation
Indices: 56695--58595 Score: 3572
Period size: 427 Copynumber: 4.4 Consensus size: 430
56685 GTTAATGTTG
*
56695 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
56759 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
56824 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
56889 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
*
56954 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTCT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
*
57019 GGAAAATATTAATTTAAGGTTATAC-TTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 GGAAAACATTAATTTAAGGTTAT-CTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
57083 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
390 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
57124 TTAAATTAAAAATTCTAAATAATA-TTTATAAAATATC-AAACAATC-AATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
57186 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
57251 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
* *
57316 AGGTAAAAATATGATGTAATAGGCATCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
*
57381 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTGTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
*
57446 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATATGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
57511 GTCTAATGATTT-TTTTTTACGTTACG--ATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
* *
57548 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTTTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
57613 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACAT
57678 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
130 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
57743 TAGGTAAAAATATGATGTAATAGGTAGCGC-T-TATAATGTAATAGGTATCGTTTATATAATGTA
195 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
57806 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
260 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
57871 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
325 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
57936 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
390 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
57977 TTTAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
58042 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
58107 AATTACATAACTTTAAAAGAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
58171 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
58236 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
58301 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
*
58366 GTCTAATGATTTATTTTTTACGTTATGATATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
58406 TTAAATTAAAAATTATAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
58471 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACAT
58536 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
58596 CATTTAATAT
Statistics
Matches: 1439, Mismatches: 20, Indels: 24
0.97 0.01 0.02
Matches are distributed among these distances:
424 35 0.02
425 13 0.01
426 196 0.14
427 486 0.34
428 166 0.12
429 454 0.32
430 62 0.04
431 27 0.02
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (430 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATA
AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:58343 original size:855 final size:857
Alignment explanation
Indices: 56695--58595 Score: 3575
Period size: 855 Copynumber: 2.2 Consensus size: 857
56685 GTTAATGTTG
*
56695 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
56759 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTGTT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
56823 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
56888 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
56953 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTC
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTC
*
57018 TGGAAAATATTAATTTAAGGTTATACTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATACTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
57083 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATA
391 CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATA
57148 TTTATAAAATATCAAACAATCAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGG
456 TTTATAAAATATCAAACAATCAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGG
57213 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCG
521 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCG
*
57278 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGCATC
586 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGCAGC
57343 GCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATC
651 GCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATC
57408 TATCCTTGTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTT
716 TATCCTTGTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTT
*
57473 TGAGTGAGTTTTAAGATATTAATTTAGTAATTATATGCGTCTAATGATTT-TTTTTTACGTTACG
781 TGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACG
57537 -ATATATTATTA
846 AATATATTATTA
* *
57548 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTTTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
57613 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
57678 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
57743 TAGGTAAAAATATGATGTAATAGGTAGCGC-T-TATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
57806 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTC
57871 TGGAAAACATTAATTTAAGGTTAT-CTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
326 TGGAAAACATTAATTTAAGGTTATAC-TTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
* *
57935 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTTAATTAAAAATTCTAAATATT
390 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAAT
58000 ATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
455 A-TTTATAAAATATC-AAACAATC-AATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTG
58065 TAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGT
517 TAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGT
58130 ATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGG
582 ATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGG
*
58194 TAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAG
647 CAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAG
*
58259 TATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAT
712 TATCTATCCTTGTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAT
58324 CTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
777 CTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
*
58389 TATGATATATATTATTA
842 TACGA-ATATATTATTA
*
58406 TTAAATTAAAAATTATAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
58471 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
58536 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
58596 CATTTAATAT
Statistics
Matches: 1023, Mismatches: 16, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
852 1 0.00
853 228 0.22
854 115 0.11
855 355 0.35
856 126 0.12
858 198 0.19
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (857 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTC
TGGAAAACATTAATTTAAGGTTATACTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAAATAATA
TTTATAAAATATCAAACAATCAATAATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGG
TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCG
ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGCAGC
GCTTATATAATGTAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATC
TATCCTTGTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTT
TGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACG
AATATATTATTA
Found at i:59984 original size:15 final size:14
Alignment explanation
Indices: 59964--60006 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
59954 CGTGTTTTCT
59964 TTTTTTGCTTCTTCC
1 TTTTTTG-TTCTTCC
*
59979 TTTTTTGTTTCCTCC
1 TTTTTTG-TTCTTCC
59994 TTTTTTGTTCTTC
1 TTTTTTGTTCTTC
60007 GAATGCTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 5 0.20
15 20 0.80
ACGTcount: A:0.00, C:0.23, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTTTGTTCTTCC
Found at i:60418 original size:16 final size:16
Alignment explanation
Indices: 60397--60484 Score: 83
Period size: 16 Copynumber: 5.6 Consensus size: 16
60387 CAAATAGTTG
* *
60397 TAATAAATATTAATAT
1 TAATAAATAATAATAA
60413 TAATAAATAATAATAA
1 TAATAAATAATAATAA
* **
60429 TAAT-AATAATATTCC
1 TAATAAATAATAATAA
60444 T-ATAATATAATAATAA
1 TAATAA-ATAATAATAA
*
60460 TAAT-AATAATAATTA
1 TAATAAATAATAATAA
60475 TAATATAATA
1 TAATA-AATA
60485 TTTATATCCC
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
14 2 0.03
15 23 0.40
16 27 0.47
17 6 0.10
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATAAATAATAATAA
Found at i:60426 original size:3 final size:3
Alignment explanation
Indices: 60397--60484 Score: 83
Period size: 3 Copynumber: 29.7 Consensus size: 3
60387 CAAATAGTTG
* * * **
60397 TAA TAAA TAT TAA TAT TAA TAAA TAA TAA TAA TAA TAA TAA TAT TCC
1 TAA T-AA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
*
60444 T-A TAA T-A TAA TAA TAA TAA TAA TAA TAA TTA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
60485 TTTATATCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
2 5 0.07
3 59 0.84
4 6 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:60482 original size:34 final size:34
Alignment explanation
Indices: 60397--60485 Score: 119
Period size: 34 Copynumber: 2.6 Consensus size: 34
60387 CAAATAGTTG
60397 TAATAAATATTAATATTAATA-AATAATAATAATAA
1 TAAT-AATATTAATA-TAATATAATAATAATAATAA
**
60432 TAATAATATTCCTATAATATAATAATAATAATAA
1 TAATAATATTAATATAATATAATAATAATAATAA
60466 TAATAAT-TATAATATAATAT
1 TAATAATAT-TAATATAATAT
60486 TTATATCCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
33 6 0.12
34 38 0.79
35 4 0.08
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.39
Consensus pattern (34 bp):
TAATAATATTAATATAATATAATAATAATAATAA
Found at i:60820 original size:54 final size:55
Alignment explanation
Indices: 60656--61109 Score: 593
Period size: 54 Copynumber: 8.4 Consensus size: 55
60646 CTTCGACCAG
* * * * *
60656 CGGGTTCGTTCCCTCTTGCTTCAGGGAG--TACAACTCGAGCAATCTTCTGCCTA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* * *
60709 CGGGTTCGCTCCCTCTTGCTTCAGGAAG--TAGAACTCGAACAATCTTCTGCCTA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* * * *
60762 CGGGTTCTCTCCCTCCTTCTTTAGGGAGTA-AGAACTCGAGCAATCTTCT-CTCAA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGC-CTA
* **
60816 CGGGTTCGCTCCCTCTTTCTTTAAGGAGTATAGAACTCGAACAATCTTCTGCAAA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* * *
60871 CGGGTTCACTCCCTCTTTCTTTCAGGGAGTATAGAACCCGAAC-ATCTTCTTCCTA
1 CGGGTTCGCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* *
60926 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATGGAACTCGAAC-ATCTTCTACCTA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* *
60980 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACGATCTTCTTCCTA
1 CGGGTTCGCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* * *
61036 CGGGTTTGCTCCCTCTTTCTTTAGGGAGTA-GGAACTCGAACAATCTTCTACCTA
1 CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
61090 CGGGTTCGCTCCCTCTTTCT
1 CGGGTTCGCTCCCTCTTTCT
61110 GTTGAGTTAA
Statistics
Matches: 360, Mismatches: 33, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
53 73 0.20
54 138 0.38
55 98 0.27
56 51 0.14
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (55 bp):
CGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
Found at i:60951 original size:164 final size:165
Alignment explanation
Indices: 60646--61109 Score: 606
Period size: 164 Copynumber: 2.9 Consensus size: 165
60636 TTTGAATAAA
* * * * * * *
60646 CTTCGACCAGCGGGTTCGTTCCCTCTTGCTTCAGGGAG--TACAACTCGAGCAATCTTCTGCCTA
1 CTTCTACCAACGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
* * * *
60709 CGGGTTCGCTCCCTCTTGC-TTCAGGAAG--TAGAACTCGAACAATCTTCTGCCTACGGGTTCTC
66 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTACCTACGGGTTCGC
* *
60771 TCCCTCCTTCTTTAGGGAGTA-AGAACTCGAGCAAT
131 TCCCTCTTTCTTTAGGGAGTATAGAACTCGAAC-AT
* **
60806 CTTCT-CTCAACGGGTTCGCTCCCTCTTTCTTTAAGGAGTATAGAACTCGAACAATCTTCTGCAA
1 CTTCTAC-CAACGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCT
* * *
60870 ACGGGTTCACTCCCTCTTTCTTTCAGGGAGTATAGAACCCGAAC-ATCTTCTTCCTACGGGTTCG
65 ACGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTACCTACGGGTTCG
*
60934 CTCCCTCTTTCTTTAGGGAGTATGGAACTCGAACAT
130 CTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAT
* * *
60970 CTTCTACCTACGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACGATCTTCTTCCT
1 CTTCTACCAACGGGTTCGCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGCCT
* *
61035 ACGGGTTTGCTCCCTCTTTCTTT-AGGGAGTA-GGAACTCGAACAATCTTCTACCTACGGGTTCG
65 ACGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTACCTACGGGTTCG
61098 CTCCCTCTTTCT
130 CTCCCTCTTTCT
61110 GTTGAGTTAA
Statistics
Matches: 264, Mismatches: 30, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
159 1 0.00
160 30 0.11
162 38 0.14
163 17 0.06
164 109 0.41
165 69 0.26
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (165 bp):
CTTCTACCAACGGGTTCGCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGCCTA
CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTACCTACGGGTTCGC
TCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAT
Found at i:60954 original size:110 final size:111
Alignment explanation
Indices: 60656--61109 Score: 615
Period size: 110 Copynumber: 4.2 Consensus size: 111
60646 CTTCGACCAG
* * * * *
60656 CGGGTTCGTTCCCTCTTGC-TTCAGGGAG--TACAACTCGAGCAATCTTCTGCCTACGGGTTCGC
1 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTACGGGTTCGC
* * * *
60718 TCCCTCTTGCTTCAGGAAG--TAGAACTCGAACAATCTTCTGCCTA
66 TCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTACCTA
* * * *
60762 CGGGTTCTCTCCCTCCTTCTTT-AGGGAGTA-AGAACTCGAGCAATCTTC-TCTCAACGGGTTCG
1 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTTC-CTACGGGTTCG
* * **
60824 CTCCCTCTTTCTTTAAGGAGTATAGAACTCGAACAATCTTCTGCAAA
65 CTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTACCTA
* *
60871 CGGGTTCACTCCCTCTTTCTTTCAGGGAGTATAGAACCCGAAC-ATCTTCTTCCTACGGGTTCGC
1 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTACGGGTTCGC
*
60935 TCCCTCTTTCTTTAGGGAGTATGGAACTCGAAC-ATCTTCTACCTA
66 TCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTACCTA
* *
60980 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACGATCTTCTTCCTACGGGTTTGC
1 CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTACGGGTTCGC
*
61045 TCCCTCTTTCTTTAGGGAGTA-GGAACTCGAACAATCTTCTACCTA
66 TCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTACCTA
61090 CGGGTTCGCTCCCTCTTTCT
1 CGGGTTCGCTCCCTCTTTCT
61110 GTTGAGTTAA
Statistics
Matches: 311, Mismatches: 26, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
106 22 0.07
107 45 0.14
109 104 0.33
110 129 0.41
111 11 0.04
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (111 bp):
CGGGTTCGCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAACAATCTTCTTCCTACGGGTTCGC
TCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTACCTA
Found at i:64051 original size:24 final size:22
Alignment explanation
Indices: 64012--64057 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
64002 CGATTCCCCT
64012 AGGGGGAATCGATTCCCATTCAA
1 AGGGGGAATCGATTCCC-TTCAA
*
64035 AGGGGGAATCGGTTTCCCTTCAA
1 AGGGGGAATC-GATTCCCTTCAA
64058 GGGTATCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (22 bp):
AGGGGGAATCGATTCCCTTCAA
Found at i:69484 original size:14 final size:14
Alignment explanation
Indices: 69465--69492 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69455 GAATCGATAC
69465 CAGAATGAAGCGAT
1 CAGAATGAAGCGAT
69479 CAGAATGAAGCGAT
1 CAGAATGAAGCGAT
69493 GGCCATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (14 bp):
CAGAATGAAGCGAT
Found at i:76703 original size:46 final size:46
Alignment explanation
Indices: 76636--76730 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
76626 CTTGCTCAAG
76636 GTGTACCTTTGTCTTAACTCTTTAGACTCTTTCCTTTCGCTCTTCA
1 GTGTACCTTTGTCTTAACTCTTTAGACTCTTTCCTTTCGCTCTTCA
*
76682 GTGTACCTTTGTCTTAACTCTTTAGCCTCTTTCCTTTCGCTCTTCA
1 GTGTACCTTTGTCTTAACTCTTTAGACTCTTTCCTTTCGCTCTTCA
76728 GTG
1 GTG
76731 CCCTAACCCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.12, C:0.28, G:0.13, T:0.47
Consensus pattern (46 bp):
GTGTACCTTTGTCTTAACTCTTTAGACTCTTTCCTTTCGCTCTTCA
Found at i:78416 original size:3 final size:3
Alignment explanation
Indices: 78396--78493 Score: 112
Period size: 3 Copynumber: 33.0 Consensus size: 3
78386 GCAAATAGTT
* *
78396 ATA ATAA ATA TTA TTA ATA ATAA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * *
78443 ATA AT- ATA AT- ATA ATA ATA ATA ATA ATA ATA ATT ATT ATT ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
78488 ATA ATA
1 ATA ATA
78494 TTTATATCCC
Statistics
Matches: 86, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
2 6 0.07
3 74 0.86
4 6 0.07
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
ATA
Found at i:78494 original size:40 final size:41
Alignment explanation
Indices: 78396--78493 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
78386 GCAAATAGTT
* *
78396 ATAATA-AATATTATTAATAATAAATAATAATAATAATAATA
1 ATAATATAATATAATAAATAAT-AATAATAATAATAATAATA
78437 ATAATAATAATATAAT--ATAATAATAATAATAATAATAATTA
1 ATAAT-ATAATATAATAAATAATAATAATAATAATAATAA-TA
* *
78478 TTATTATAATATAATA
1 ATAATATAATATAATA
78494 TTTATATCCC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
40 27 0.54
41 15 0.30
42 1 0.02
43 7 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (41 bp):
ATAATATAATATAATAAATAATAATAATAATAATAATAATA
Found at i:82354 original size:9 final size:9
Alignment explanation
Indices: 82342--82392 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
82332 AATAATAGTA
82342 ATAATAATT
1 ATAATAATT
82351 ATAATAATGT
1 ATAATAAT-T
*
82361 ATTATAA-T
1 ATAATAATT
* *
82369 ATATTAGTT
1 ATAATAATT
*
82378 ATAATAATA
1 ATAATAATT
82387 ATAATA
1 ATAATA
82393 TAATTTTATA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
8 5 0.15
9 21 0.64
10 7 0.21
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (9 bp):
ATAATAATT
Found at i:82680 original size:55 final size:55
Alignment explanation
Indices: 82621--82953 Score: 399
Period size: 55 Copynumber: 6.1 Consensus size: 55
82611 GTAAAACTAA
* * * *
82621 AACAATCTTCATA-AAACGGGTTTGTTCCCTATTCCTTCAGAGAGTAT-AGAACTTG
1 AACAATCTTCA-ACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAG-ACTCG
* ** * * *
82676 AACAACCTTCAACAAACGTGTCCGCTTCCTATTCCTTCAAAGAGTATAGGACT--
1 AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
* * *
82729 --CAATCTTCAACAAACGTGTCTCCTCCATATTCCTTCAGAGAGTATAAGACTCG
1 AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
* * *
82782 AACAATCTTCAACAATCATGTATGTTCCCTATTCCTTCAGAGAGTATAAGACTCG
1 AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
* * * *
82837 AACAATCTTCAATAATCGTGTATGCTCCCTATTCCTTTAGAGAGTATAAGAATCG
1 AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
* * *
82892 AACAATCTTCAACAATCGTGTTTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
1 AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
82947 AACAATC
1 AACAATC
82954 GTGTCTGCTC
Statistics
Matches: 241, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
51 44 0.18
54 1 0.00
55 195 0.81
56 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (55 bp):
AACAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
Found at i:82813 original size:106 final size:105
Alignment explanation
Indices: 82648--82997 Score: 383
Period size: 110 Copynumber: 3.3 Consensus size: 105
82638 GGGTTTGTTC
* * * **
82648 CCTATTCCTTCAGAGAGTAT-AGAACTTGAACAACCTTCAACAAACGTGTCCGCTT-CCTATTCC
1 CCTATTCCTTCAGAGAGTATAAG-ACTCGAACAATCTTCAACAATCGTGTATG-TTCCCTATTCC
* * * *
82711 TTCAAAGAGTATAGGACTCAATCTTCAACAAACGTGTCTCCT
64 TTCAGAGAGTATAAGACTCAATCTTCAACAATCGTGTCTGCT
*
82753 CCATATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCATGTATGTTCCCTATTCCT
1 CC-TATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTATGTTCCCTATTCCT
* *
82818 TCAGAGAGTATAAGACTCGAACAATCTTCAATAATCGTGTATGCT
65 TCAGAGAGTATAAGACT----CAATCTTCAACAATCGTGTCTGCT
* * * * *
82863 CCCTATTCCTTTAGAGAGTATAAGAATCGAACAATCTTCAACAATCGTGTTTGCTCCCTATTTCT
1 -CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTATGTTCCCTATTCCT
*
82928 TCAGAGAGTATAAGA--C--TC--GAACAATCGTGTCTGCT
65 TCAGAGAGTATAAGACTCAATCTTCAACAATCGTGTCTGCT
* * *
82963 CCTATTTCTTCAAAGAGTATAAGACTCGAATAATC
1 CCTATTCCTTCAGAGAGTATAAGACTCGAACAATC
82998 GTGTCTGCTC
Statistics
Matches: 211, Mismatches: 26, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
99 30 0.14
100 14 0.07
102 2 0.01
104 1 0.00
105 4 0.02
106 65 0.31
107 2 0.01
110 91 0.43
111 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (105 bp):
CCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTATGTTCCCTATTCCTT
CAGAGAGTATAAGACTCAATCTTCAACAATCGTGTCTGCT
Found at i:83027 original size:45 final size:45
Alignment explanation
Indices: 82902--83042 Score: 239
Period size: 45 Copynumber: 3.2 Consensus size: 45
82892 AACAATCTTC
*
82902 AACAATCGTGTTTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
*
82947 AACAATCGTGTCTGCT-CCTATTTCTTCAAAGAGTATAAGACTCG
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
* *
82991 AATAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCA
1 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
83036 AACAATC
1 AACAATC
83043 TTCCACAAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
44 42 0.47
45 47 0.53
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (45 bp):
AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
Found at i:83343 original size:55 final size:55
Alignment explanation
Indices: 83004--84084 Score: 1227
Period size: 54 Copynumber: 19.8 Consensus size: 55
82994 AATCGTGTCT
* * * * * *
83004 GCTCCCTATTTCTTCAGAGAGTATA-AGACTCAAACAATCTTC-CACAAACGAGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGA-ACTCGAACAATCTTCTGA-AAACGGGTTC
* * * *
83059 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATATTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * *
83115 GCTCCCTTTTTCTTTTAGGAAGTATAGAACTCGAATAATCTTCTGCAAATGGGTTC
1 GCTCCCTCTTTC-TTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83171 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCAAATAATCTTCTGTAAACGGGTTC
1 GCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83227 GCTCTCTTTTTCTTTTAGGAAGTATAGAACTCGAACAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTC-TTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
83283 GCTCCCTCTTTCTTTCAGGGAGTATAGAACTCGAA-AATCTTCTGAAAACGGGTTC
1 GCTCCCTCTTTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * **
83338 TCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAAC-ATATTCTTTAAACGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83392 GCTCCCTCTTTCTTTAGGGAGTATATAACTCAAAAAATCTTCTGAAAATGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* ** *
83447 GCTCCCTCTTTCTTTAGGGAGTATAGAACTTGAAC-ATCTTCTTCAAACGGGTTG
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * ** *
83501 GCTCCTTTTTTCTTTAAGGAGTATAGAACTCG-ACCATCTTCTTCAAACAGGTT-
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * * *
83554 -CTACATCTTTTTTTAGGGAATATAGAACTCGAAC-ATCTTCTGTAAACAGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * **
83607 GCTCCCCCTTTCTTTAGGGAGTATAGAACTTGAACAATCTTATTCAAACGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* ** *
83662 GCTCCCTCTTTATTTAGGGAGTATAGAACTTC-AAC-ATCTTCTTCAAACGGGTTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAAC-TCGAACAATCTTCTGAAAACGGGTTC
* * * *
83716 ACTCCCTCTTTATTTAGGGAGTATAGAACTCGAACAATCTTCTAAAAATGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83771 GCTCCCTCTTCCTTTAGGGAGTATAGAAATCGAAC-ATCTTCTAAAAACGGGTTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* *
83825 GCTCTCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * ** * *
83880 GCTCCCTCTTTCTTCAGGGAGTA-GGAACTCGAACAATCTTTTTCAAATGAGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * *
83934 GCTCACTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTATGAAAATGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * *
83989 GTTCCCTCTTCCTTTAGGGAGTATAGAACTCGAAC-ATCTTTTAAAAATGGGTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
** *
84043 GCTCCCTCTTTCTTTAGGTTGTATGGAACTCGAACAATCTTC
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTC
84085 ATTTGCCTCA
Statistics
Matches: 890, Mismatches: 116, Indels: 40
0.85 0.11 0.04
Matches are distributed among these distances:
52 41 0.05
53 6 0.01
54 345 0.39
55 289 0.32
56 202 0.23
57 7 0.01
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (55 bp):
GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
Found at i:83429 original size:109 final size:109
Alignment explanation
Indices: 83004--84084 Score: 1280
Period size: 109 Copynumber: 9.9 Consensus size: 109
82994 AATCGTGTCT
* * * * ** *
83004 GCTCCCTATTTCTTCAGAGAGTATA-AGACTCAAACAATCTTCCACAAACGAGTTCGCTCCCTCT
1 GCTCCCTCTTTCTTTAGGGAGTATAGA-ACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCT
* * * *
83068 TTCTTTCAGGAAGTATAGAACTCGAATAATATTCTGCAAACGGGTTC
64 TTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * *
83115 GCTCCCTTTTTCTTTTAGGAAGTATAGAACTCGAATAATCTTCTGCAAATGGGTTCGCTCCCTCT
1 GCTCCCTCTTTC-TTTAGGGAGTATAGAACTCGAA-CATCTTCTTCAAACGGGTTCGCTCCCTCT
* * * *
83180 TTCTTTCAGGAAGTATAGAACTCAAATAATCTTCTGTAAACGGGTTC
64 TTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83227 GCTCTCTTTTTCTTTTAGGAAGTATAGAACTCGAACAATCTTCTGCAAACGGGTTCGCTCCCTCT
1 GCTCCCTCTTTC-TTTAGGGAGTATAGAACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCT
83292 TTCTTTCAGGGAGTATAGAACTCGAA-AATCTTCTGAAAACGGGTTC
64 TTCTTT-AGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * *
83338 TCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATATTCTTTAAACGGGTTCGCTCCCTCTTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
* * * *
83403 CTTTAGGGAGTATATAACTCAAAAAATCTTCTGAAAATGGGTTC
66 CTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83447 GCTCCCTCTTTCTTTAGGGAGTATAGAACTTGAACATCTTCTTCAAACGGGTTGGCTCCTTTTTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
* * ** *
83512 CTTTAAGGAGTATAGAACTCG-ACCATCTTCTTCAAACAGGTT-
66 CTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * * *
83554 -CTACATCTTTTTTTAGGGAATATAGAACTCGAACATCTTCTGT-AAACAGGTTCGCTCCCCCTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCT-TCAAACGGGTTCGCTCCCTCTT
* * **
83617 TCTTTAGGGAGTATAGAACTTGAACAATCTTATTCAAACGGGTTC
65 TCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* **
83662 GCTCCCTCTTTATTTAGGGAGTATAGAACTTC-AACATCTTCTTCAAACGGGTTTACTCCCTCTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAAC-TCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * *
83726 TATTTAGGGAGTATAGAACTCGAACAATCTTCTAAAAATGGGTTC
65 TCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * ** * *
83771 GCTCCCTCTTCCTTTAGGGAGTATAGAAATCGAACATCTTCTAAAAACGGGTTTGCTCTCTCTTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
*
83836 CTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTC
66 CTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * * * *
83880 GCTCCCTCTTTCTTCAGGGAGTA-GGAACTCGAACAATCTTTTTCAAATGAGTTCGCTCACTCTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCTT
* *
83944 TCTTTAGGGAGTATAGAACTCGAACAATCTTATGAAAATGGGTTC
65 TCTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
* * * *
83989 GTTCCCTCTTCCTTTAGGGAGTATAGAACTCGAACATCTT-TTAAAAATGGGTTCGCTCCCTCTT
1 GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCTT-CAAACGGGTTCGCTCCCTCTT
** *
84053 TCTTTAGGTTGTATGGAACTCGAACAATCTTC
65 TCTTTAGGGAGTATAGAACTCGAACAATCTTC
84085 ATTTGCCTCA
Statistics
Matches: 849, Mismatches: 106, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
106 71 0.08
107 19 0.02
108 46 0.05
109 470 0.55
110 34 0.04
111 39 0.05
112 169 0.20
113 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (109 bp):
GCTCCCTCTTTCTTTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
CTTTAGGGAGTATAGAACTCGAACAATCTTCTGAAAACGGGTTC
Found at i:84523 original size:37 final size:37
Alignment explanation
Indices: 84482--84614 Score: 144
Period size: 37 Copynumber: 3.6 Consensus size: 37
84472 TTTCTCCAAC
*
84482 ACTCTTCCGAGAAGGCTTAAAATAGATTTGCTTCACT
1 ACTCTTCCGAGAAGGCTTAAGATAGATTTGCTTCACT
* * *
84519 ACTCTTCAGTGAAGGCTTAAGATGGATTTGCTTCACT
1 ACTCTTCCGAGAAGGCTTAAGATAGATTTGCTTCACT
* * * * *
84556 ACTCTT-CGATGAAGGCGTAGGATATA-TCGCTTCATT
1 ACTCTTCCGA-GAAGGCTTAAGATAGATTTGCTTCACT
* *
84592 ACTCTTCGGTGAAGGCTTAAGAT
1 ACTCTTCCGAGAAGGCTTAAGAT
84615 TAACTTTGCT
Statistics
Matches: 78, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
36 26 0.33
37 52 0.67
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (37 bp):
ACTCTTCCGAGAAGGCTTAAGATAGATTTGCTTCACT
Found at i:86088 original size:125 final size:125
Alignment explanation
Indices: 85893--86150 Score: 340
Period size: 125 Copynumber: 2.1 Consensus size: 125
85883 CCTTCACTAG
*
85893 TGCCCCAATATTATCTTATACTAGTACGAGCCCTCAAAATACCCCAACACCTCAAATTGCAAGGC
1 TGCCCCAACATTATCTTATACTAGTACGAGCCCTCAAAATACCCCAACACCTCAAATTGCAAGGC
* *
85958 TCATTC-TCAATGCCTTCTTAGTCT-AAGCCTTGTCATCTCAAATTGATGTGGGTTCAGTCA
66 TCATTCTTC-ATGCCTCCTTAGTCTGAA-CCTTGTCATCTCAAACTGATGTGGGTTCAGTCA
* * * * ** * *
86018 TGCCCCAACATTGTCTTATACTGGTACGAGCCTTCTAAATGTCCCATCACCTCAATTTGCAAGGC
1 TGCCCCAACATTATCTTATACTAGTACGAGCCCTCAAAATACCCCAACACCTCAAATTGCAAGGC
* * * * *
86083 TCATTCTTCATGCCTCCTTGGTCTGAATCTTGTCATCTCAACCTGATGTGGGTTTAGTCG
66 TCATTCTTCATGCCTCCTTAGTCTGAACCTTGTCATCTCAAACTGATGTGGGTTCAGTCA
86143 TGCCCCAA
1 TGCCCCAA
86151 TATATCATAA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
125 111 0.97
126 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (125 bp):
TGCCCCAACATTATCTTATACTAGTACGAGCCCTCAAAATACCCCAACACCTCAAATTGCAAGGC
TCATTCTTCATGCCTCCTTAGTCTGAACCTTGTCATCTCAAACTGATGTGGGTTCAGTCA
Found at i:90487 original size:45 final size:46
Alignment explanation
Indices: 90419--90520 Score: 127
Period size: 45 Copynumber: 2.2 Consensus size: 46
90409 TGTCATTTAC
* * *
90419 AAAAAAAAAATCCTAACCGCATGATATCTAATTCACATGCTTGTTTG
1 AAAAAATAAATCCTAACCACATGATATCTAATTCACATACTT-TTTG
* * *
90466 -AAAAATAAA-CCTAACCACATGATCTCTAGTTCGCATACTTTTTG
1 AAAAAATAAATCCTAACCACATGATATCTAATTCACATACTTTTTG
90510 AAAAAATAAAT
1 AAAAAATAAAT
90521 AAATTCGAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
44 4 0.09
45 35 0.74
46 8 0.17
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (46 bp):
AAAAAATAAATCCTAACCACATGATATCTAATTCACATACTTTTTG
Found at i:94989 original size:24 final size:23
Alignment explanation
Indices: 94935--95014 Score: 61
Period size: 24 Copynumber: 3.3 Consensus size: 23
94925 TAAATATTTT
* * * *
94935 TTCTGATTTCTGACTTGAATTCTA
1 TTCTGA-TACTGACATGGATTCTG
* *
94959 TTATGATACATGACCTGGATTCTG
1 TTCTGATAC-TGACATGGATTCTG
* *
94983 TTCTGATTTCTGATATGGATTCTG
1 TTCTGA-TACTGACATGGATTCTG
95007 TTCTGATA
1 TTCTGATA
95015 TCTCATTTGA
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
23 3 0.07
24 39 0.89
25 2 0.05
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.46
Consensus pattern (23 bp):
TTCTGATACTGACATGGATTCTG
Found at i:95032 original size:24 final size:24
Alignment explanation
Indices: 94981--95046 Score: 60
Period size: 24 Copynumber: 2.8 Consensus size: 24
94971 ACCTGGATTC
* * * *
94981 TGTTCTGATTTCTGATATGGATTC
1 TGTTCTGATATCTCATATGAATTA
*
95005 TGTTCTGATATCTCATTTGAATTA
1 TGTTCTGATATCTCATATGAATTA
* * *
95029 TGTTTTGATTTCTGATAT
1 TGTTCTGATATCTCATAT
95047 CTCCGTTTAC
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.20, C:0.11, G:0.17, T:0.53
Consensus pattern (24 bp):
TGTTCTGATATCTCATATGAATTA
Found at i:100071 original size:68 final size:68
Alignment explanation
Indices: 99991--100314 Score: 508
Period size: 68 Copynumber: 4.8 Consensus size: 68
99981 AAAGATTATT
* * *
99991 AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCAATTATGTCTGTTAGATGAAAGGTTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
100056 TTG
66 TTG
* *
100059 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGACAGTTAGATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
100124 TTG
66 TTG
* * *
100127 AGGCCTAACTATGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGTCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
100192 TTG
66 TTG
*
100195 AGGCCTAAATGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
100260 TTG
66 TTG
* * *
100263 AGGCCTATCTATGCATTTGGA-AGAAAGGTTTCAATTAT-TCCAGTTAGATGAA
1 AGGCCTAACTGTGCATTT-GACAGAAAGGTGTCAATTATGT-CAGTTAGATGAA
100315 TGATTAAATA
Statistics
Matches: 237, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
67 1 0.00
68 234 0.99
69 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:100634 original size:242 final size:241
Alignment explanation
Indices: 100271--100726 Score: 662
Period size: 242 Copynumber: 1.9 Consensus size: 241
100261 TGAGGCCTAT
* ** *
100271 CTATGCATTTGGAAGAAAGGTTTCAATTATTCCAGTTAGATGAATGATTAAATACAGCTGAGTAA
1 CTATGCATTTGGAAGAAAGGTGTCAATTAGGCCAGTTAGATGAACGATTAAATACAGCTGAGTAA
* *
100336 AATAAATGGCCTAGCTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATTAA
66 AATAAATGGCATAACTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATTAA
* ** * * * ** *
100401 ATACCGTTGAGTAAAAGATGAATGGCCTAGTTGTGCATTTGGTA-AAATGTGTCAATTATGCCAG
131 ATACCATTGAGTAAAAGATGAATGGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCAAG
100465 TTAGATGAATGGATAAATAACGTTGAGTAAAAGATGAATGGCCTGG
196 TTAGATGAATGGATAAATAACGTTGAGTAAAAGATGAATGGCCTGG
* * * * *
100511 CTATGTATTTGGCAGAAAGGTGTCTATTAGGCCAGTTAGATGAACGATTAAATACTGTTGAGTAA
1 CTATGCATTTGGAAGAAAGGTGTCAATTAGGCCAGTTAGATGAACGATTAAATACAGCTGAGT-A
* * * *
100576 AAGATGAATGGCATAACTGTGCATTTGGCAGAAAGGTTTCAAGTATGCCAGTTAGATGAACGGTT
65 AA-ATAAATGGCATAACTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATT
100641 AAATACCATTGAGTAAAAGATGAATGGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCA
129 AAATACCATTGAGTAAAAGATGAATGGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCA
*
100706 AGTTAGATGAATGGCTAAATA
194 AGTTAGATGAATGGATAAATA
100727 CCTTTGGGGT
Statistics
Matches: 188, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
240 54 0.29
241 3 0.02
242 97 0.52
243 34 0.18
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (241 bp):
CTATGCATTTGGAAGAAAGGTGTCAATTAGGCCAGTTAGATGAACGATTAAATACAGCTGAGTAA
AATAAATGGCATAACTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATTAA
ATACCATTGAGTAAAAGATGAATGGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCAAG
TTAGATGAATGGATAAATAACGTTGAGTAAAAGATGAATGGCCTGG
Found at i:100727 original size:162 final size:161
Alignment explanation
Indices: 100274--100716 Score: 604
Period size: 161 Copynumber: 2.8 Consensus size: 161
100264 GGCCTATCTA
* * *
100274 TGCATTTGGAAGAAAGGTTTCAATTATTCCAGTTAGATGAATGATTAAATACAGCTGAGT-AAA-
1 TGCATTTGGAAGAAAGGTTTCAATTATGCCAGTTAGATGAATGGTTAAATACA-TTGAGTAAAAG
* * *
100337 ATAAATGGCCTAGCTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATTAAA
65 ATGAATGGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAA
* **
100402 TACCGTTGAGTAAAAGATGAATGGCCTAGTTG
130 TACCGTTGAGTAAAAGATGAATGGCATAACTG
* * * * *
100434 TGCATTTGGTA-AAATGTGTCAATTATGCCAGTTAGATGAATGGATAAATAACGTTGAGTAAAAG
1 TGCATTTGGAAGAAAGGTTTCAATTATGCCAGTTAGATGAATGGTTAAAT-ACATTGAGTAAAAG
* * * * *
100498 ATGAATGGCCTGGCTATGTATTTGGCAGAAAGGTGTCTATTAGGCCAGTTAGATGAACGATTAAA
65 ATGAATGGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAA
*
100563 TACTGTTGAGTAAAAGATGAATGGCATAACTG
130 TACCGTTGAGTAAAAGATGAATGGCATAACTG
* * *
100595 TGCATTTGGCAGAAAGGTTTCAAGTATGCCAGTTAGATGAACGGTTAAATACCATTGAGTAAAAG
1 TGCATTTGGAAGAAAGGTTTCAATTATGCCAGTTAGATGAATGGTTAAATA-CATTGAGTAAAAG
* * *
100660 ATGAATGGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCAAGTTAGATGAA
65 ATGAATGGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAA
100717 TGGCTAAATA
Statistics
Matches: 243, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
159 38 0.16
160 15 0.06
161 96 0.40
162 94 0.39
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (161 bp):
TGCATTTGGAAGAAAGGTTTCAATTATGCCAGTTAGATGAATGGTTAAATACATTGAGTAAAAGA
TGAATGGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAAT
ACCGTTGAGTAAAAGATGAATGGCATAACTG
Found at i:100728 original size:81 final size:81
Alignment explanation
Indices: 100264--100716 Score: 572
Period size: 81 Copynumber: 5.6 Consensus size: 81
100254 GTGCCTTTGA
* * * * * * * *
100264 GGCCTATCTATGCATTTGGAAGAAAGGTTTCAATTATTCCAGTTAGATGAATGATTAAATACAGC
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
*
100329 TGAGT-AAA-ATAAAT
66 TGAGTAAAAGATGAAT
* *
100343 GGCCTAGCTGTGCATTTGGCAGAAAGATGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
100408 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
* * * * * * *
100424 GGCCTAGTTGTGCATTTGGTA-AAATGTGTCAATTATGCCAGTTAGATGAATGGA-TAAATAACG
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAA-CGATTAAATACCG
100487 TTGAGTAAAAGATGAAT
65 TTGAGTAAAAGATGAAT
* * * * * *
100504 GGCCTGGCTATGTATTTGGCAGAAAGGTGTCTATTAGGCCAGTTAGATGAACGATTAAATACTGT
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
100569 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
* * * * * *
100585 GGCATAACTGTGCATTTGGCAGAAAGGTTTCAAGTATGCCAGTTAGATGAACGGTTAAATACCAT
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
100650 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
* * *
100666 GGCCTAACTATGCATTTGGCAGAAAGGTGTCAAGCATGCAAGTTAGATGAA
1 GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAA
100717 TGGCTAAATA
Statistics
Matches: 323, Mismatches: 46, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
79 60 0.19
80 72 0.22
81 191 0.59
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (81 bp):
GGCCTAGCTATGCATTTGGCAGAAAGGTGTCAAGTATGCCAGTTAGATGAACGATTAAATACCGT
TGAGTAAAAGATGAAT
Found at i:100807 original size:2 final size:2
Alignment explanation
Indices: 100800--100846 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
100790 AAAGGGATGC
100800 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100842 TA TA T
1 TA TA T
100847 GTACAACAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:102224 original size:55 final size:55
Alignment explanation
Indices: 102158--102477 Score: 518
Period size: 55 Copynumber: 5.8 Consensus size: 55
102148 TGGCACTATA
* *
102158 TGTGTACAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCATTG
1 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
* *
102213 TGTGTGTAAAACTAAGAAATTCATAATAAGTTTCTGAATTTCCGTATGGGCACTG
1 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
*
102268 TGTTTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
1 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
* *
102323 TGTGTGCAAAACGTAA-AAATTCATAATAAGTTTATGAATTTCTGTATGTGCACTG
1 TGTGTGCAAAAC-TAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
* *
102378 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTGGCATTG
1 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
* *
102433 TGTGTGC-AACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTA
1 TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTA
102478 ATTGCATTAG
Statistics
Matches: 247, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
54 39 0.16
55 205 0.83
56 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35
Consensus pattern (55 bp):
TGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTG
Done.