genome.fa.s6306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006306.1 Hibiscus syriacus cultivar Beakdansim tig00015070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65064

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1265--1305	8	5.2	8	82	5	57	34	0	29	36	1.58
1377--2355	127	7.9	127	88	6	1471	23	24	19	31	1.98
1846--2320	115	3.9	119	85	7	574	24	23	19	32	1.98
1962--2355	125	3.1	127	90	5	581	24	24	20	31	1.98
1377--2355	493	2.0	493	89	5	1505	23	24	19	31	1.98
2747--2827	33	2.6	30	80	13	83	40	3	3	51	1.37
2747--2843	31	3.0	33	77	8	110	40	3	4	52	1.36
3354--3442	21	4.3	21	85	8	128	22	26	31	19	1.97
5216--5259	19	2.4	19	81	7	56	54	2	0	43	1.12
5203--5263	17	3.4	18	77	11	54	54	1	0	44	1.10
5231--5300	33	2.1	34	82	12	83	62	5	0	31	1.18
6550--6600	23	2.2	24	82	10	70	41	5	17	35	1.74
6523--6681	84	1.9	85	90	1	257	41	12	14	31	1.83
10535--10570	15	2.2	17	80	19	58	16	11	33	38	1.84
10539--10574	15	2.4	15	100	0	72	22	8	30	38	1.83
10554--12022	200	7.5	200	82	7	1163	29	14	16	39	1.88
10662--11937	376	3.3	378	81	7	1217	28	14	16	40	1.87
10860--11943	576	1.9	579	91	2	1795	27	13	16	42	1.86
12148--12206	18	3.3	18	73	0	55	49	16	3	30	1.63
12154--12206	12	4.4	12	78	0	61	49	18	3	28	1.65
12170--12217	24	2.0	24	84	8	62	50	12	6	31	1.65
13474--13507	6	5.7	6	89	0	50	20	32	2	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14312--14363	2	26.0	2	96	0	95	48	0	1	50	1.12
14699--14742	15	2.9	15	86	0	70	29	0	50	20	1.49
15108--16366	198	6.3	199	92	1	1972	27	14	15	42	1.86
15108--16366	397	3.2	397	91	1	1988	27	14	15	42	1.86
16738--16786	19	2.6	19	93	0	80	55	12	2	30	1.48
20372--20415	19	2.3	19	88	0	61	34	11	4	50	1.59
20881--21632	182	4.1	182	85	4	944	27	15	11	44	1.82
22998--23031	16	2.2	16	89	5	52	5	14	8	70	1.31
26054--26088	2	18.0	2	94	5	63	48	0	0	51	1.00
36628--36667	22	1.9	20	90	10	62	47	37	2	12	1.55
43686--43768	23	3.7	23	79	6	82	27	22	18	31	1.97
55550--55583	17	2.1	16	88	5	50	76	0	8	14	1.01
57334--57470	43	3.2	44	78	13	133	29	18	25	26	1.98
57350--57516	86	1.9	86	80	7	196	28	19	22	29	1.98
57840--57877	20	1.9	20	94	0	67	0	39	26	34	1.57
58239--58289	20	2.5	20	77	17	52	56	5	9	27	1.54

Tables:   1

The End!