Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006309.1 Hibiscus syriacus cultivar Beakdansim tig00015073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59260

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--216
22
2.5
22
87
0
90
37
27
16
18
1.93
207--332
20
6.5
18
78
11
90
44
19
22
13
1.86
245--359
20
5.8
20
80
2
124
44
20
21
13
1.85
245--359
39
2.9
39
82
2
140
44
20
21
13
1.85
220--335
59
2.0
59
84
0
151
44
19
23
12
1.84
1055--1081
2
13.5
2
100
0
54
48
0
0
51
1.00
15987--16033
15
3.1
16
75
9
53
27
2
4
65
1.22
15992--16032
16
2.7
16
77
11
50
31
2
2
63
1.20
16242--16298
24
2.3
24
93
3
96
31
22
15
29
1.95
19468--19556
34
2.6
34
82
5
99
62
14
2
20
1.42
23182--23226
22
2.0
22
100
0
90
17
17
22
42
1.89
25416--25460
20
2.2
20
92
0
72
37
24
17
20
1.93
25454--25592
20
7.0
20
74
7
131
42
22
15
20
1.89
25454--25592
40
3.5
40
83
8
176
42
22
15
20
1.89
25434--25592
80
2.0
79
90
1
246
41
22
15
20
1.90
26068--26150
20
4.2
20
95
1
132
10
16
22
49
1.77
26068--26161
40
2.4
39
83
5
134
12
15
21
50
1.78
29760--29900
66
2.2
63
88
6
205
30
0
17
51
1.51
30016--30109
34
2.8
34
96
0
170
19
23
20
37
1.94
30289--30375
39
2.2
39
93
0
147
17
14
20
47
1.83
31144--31207
20
3.2
20
80
4
67
42
21
14
21
1.88
31267--31336
20
3.5
20
96
0
122
15
20
22
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31622--31657
18
2.0
18
88
0
54
16
2
27
52
1.57
33919--33972
24
2.2
24
83
0
63
40
22
16
20
1.91
34098--34131
12
2.8
12
90
0
50
14
0
29
55
1.40
40597--40655
21
2.7
22
84
7
68
22
33
25
18
1.96
44468--44539
19
3.7
19
94
3
117
27
11
23
37
1.89
44527--44622
20
4.8
20
85
2
138
18
16
25
39
1.91
44531--44622
41
2.3
40
84
3
130
19
17
23
39
1.92
44642--44695
20
2.7
19
75
8
63
24
14
33
27
1.94
48493--48591
49
2.0
49
96
0
180
23
7
30
39
1.81
56401--56447
18
2.6
17
87
12
60
38
6
0
55
1.26
57351--57433
3
28.0
3
92
7
143
66
0
0
33
0.92
58123--58170
21
2.2
22
85
3
62
68
2
0
29
1.01

Tables:   1

The End!