Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000631.1 Hibiscus syriacus cultivar Beakdansim tig00001227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81378

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--87
45
1.9
45
81
4
104
36
21
4
36
1.75
1091--1165
36
2.1
36
100
0
150
21
22
10
45
1.82
5248--5331
5
17.6
5
70
15
54
76
0
5
17
0.99
5248--5331
24
3.3
24
78
15
73
76
0
5
17
0.99
5266--5331
18
3.6
18
81
8
71
77
0
6
16
0.96
5249--5331
9
8.8
9
76
19
64
75
0
6
18
0.99
5227--5366
61
2.2
65
76
19
145
72
1
10
15
1.17
5411--5471
16
3.9
15
77
10
52
63
1
0
34
1.04
5345--5484
50
2.8
50
75
16
121
62
3
4
30
1.31
6682--6738
2
30.0
2
74
22
52
49
0
3
47
1.18
6682--6738
21
2.5
22
86
8
80
49
0
3
47
1.18
7537--7736
111
1.8
110
90
1
319
25
19
20
35
1.96
8854--8901
17
2.9
16
81
6
51
0
18
2
79
0.84
8862--8898
14
2.5
15
83
16
51
0
16
2
81
0.81
19071--19212
70
2.0
70
95
0
257
35
11
13
39
1.81
19449--19521
4
17.2
4
83
8
83
75
1
2
20
1.00
19441--19521
22
3.8
20
82
9
90
75
1
3
19
1.02
19441--19521
34
2.4
34
80
14
96
75
1
3
19
1.02
19451--19548
8
11.8
8
75
7
61
75
3
5
16
1.11
19548--19575
2
14.0
2
100
0
56
50
0
0
50
1.00
19633--19711
25
3.1
25
68
23
58
65
2
2
29
1.18
19532--19677
65
2.3
66
81
12
171
63
2
2
31
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20951--20988
19
2.0
20
89
5
60
47
5
2
44
1.39
20953--20999
12
3.9
12
81
8
51
46
4
2
46
1.34
20951--20999
19
2.6
19
83
6
55
48
4
2
44
1.33
27496--27542
21
2.3
20
85
3
58
53
4
8
34
1.51
28605--28647
22
2.0
21
86
4
59
23
0
4
72
1.04
28594--28663
16
4.4
16
75
20
67
25
1
2
70
1.10
28858--28931
31
2.4
31
93
0
121
24
14
20
40
1.90
52254--52510
91
2.8
90
78
2
221
27
19
10
42
1.85
52232--52510
45
6.2
45
79
4
240
27
19
10
41
1.84
52924--52984
22
2.9
20
86
11
86
26
32
13
27
1.93
52924--52995
22
3.5
20
85
9
85
27
31
12
27
1.93
53020--53074
21
2.6
21
83
11
67
32
30
10
25
1.90
53040--53091
18
2.6
19
85
14
70
28
26
15
28
1.96
52925--53146
95
2.3
95
84
4
288
31
27
13
27
1.94
59309--59484
45
3.9
45
93
1
255
30
21
9
39
1.85
59324--59523
90
2.2
90
84
3
251
30
23
10
37
1.87
59324--59523
45
4.4
45
88
1
159
30
23
10
37
1.87
59461--59611
79
1.9
79
89
2
232
27
24
11
36
1.90
60016--60086
22
3.5
20
80
12
74
28
33
9
28
1.89
68734--68793
22
2.7
22
94
0
111
40
5
18
36
1.72
71081--71113
14
2.2
16
89
10
52
33
21
12
33
1.90
74104--74158
14
4.0
14
77
13
69
45
32
0
21
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80728--80806
30
2.5
31
76
11
81
26
20
5
48
1.70

Tables:   1

The End!