Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006310.1 Hibiscus syriacus cultivar Beakdansim tig00015074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73174

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
801--846
17
2.8
17
75
15
51
30
0
2
67
1.03
3392--3446
28
2.0
28
100
0
110
30
25
14
29
1.95
3637--3966
21
15.5
21
72
8
148
44
4
21
29
1.73
3637--3947
42
7.3
42
74
7
216
43
4
21
29
1.73
3852--3992
65
2.2
64
83
5
167
40
4
24
30
1.74
3852--3992
44
3.2
44
84
2
178
40
4
24
30
1.74
3790--3992
86
2.3
86
78
5
203
42
4
23
29
1.75
3979--4010
14
2.3
14
94
0
55
28
3
31
37
1.73
4424--4477
24
2.1
27
86
10
78
22
48
11
18
1.79
10846--10873
2
14.0
2
100
0
56
50
0
0
50
1.00
13423--13459
12
3.1
12
96
0
65
8
29
8
54
1.59
19094--19544
251
1.8
245
87
5
672
34
12
11
40
1.80
19977--20136
2
84.5
2
68
27
84
38
1
5
55
1.30
19977--20157
9
20.0
9
72
22
123
38
1
5
54
1.34
19977--20212
75
3.2
76
77
13
205
38
2
6
53
1.38
20041--20127
29
3.0
29
83
14
110
39
0
3
57
1.16
24625--24697
30
2.4
30
88
0
110
20
20
26
32
1.97
31368--31430
33
1.9
33
100
0
126
12
20
26
39
1.89
45766--45835
29
2.3
31
73
4
72
54
1
11
32
1.45
58765--58836
31
2.2
33
83
11
87
59
5
4
30
1.39
60112--60190
23
3.4
23
77
6
88
45
8
11
34
1.71
60876--60945
20
3.5
20
70
18
72
21
22
22
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60817--61174
41
8.6
42
95
1
625
21
20
26
31
1.98
61254--61286
6
5.5
6
100
0
66
33
51
15
0
1.43
66156--66192
20
1.9
19
89
10
58
51
10
18
18
1.75
72170--72199
15
1.9
16
93
6
53
83
3
0
13
0.77
72898--72957
29
2.0
29
84
9
77
56
3
3
36
1.32

Tables:   1

The End!