Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006311.1 Hibiscus syriacus cultivar Beakdansim tig00015076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54555

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1700--1747
16
2.9
16
81
9
53
66
0
20
12
1.24
3009--3299
128
2.3
127
83
1
359
34
17
19
27
1.95
3906--3959
23
2.3
23
93
6
92
37
35
14
12
1.85
5122--5156
2
17.5
2
93
0
61
48
0
2
48
1.16
6390--6429
10
3.7
10
84
15
53
82
2
12
2
0.87
6374--6427
23
2.4
22
78
6
63
81
5
9
3
0.97
7397--7439
13
3.2
13
83
3
50
27
4
16
51
1.64
18936--18974
2
20.0
2
89
5
62
48
2
0
48
1.15
20993--21039
21
2.2
21
84
0
67
19
27
17
36
1.93
21035--21228
20
9.3
20
79
10
158
35
20
19
24
1.95
21020--21228
41
5.0
41
75
13
185
34
20
19
26
1.96
22089--22142
24
2.2
24
90
0
81
22
18
18
40
1.91
24558--24632
20
3.8
20
89
0
114
34
22
22
20
1.96
24554--24630
40
1.9
41
91
2
129
36
20
22
20
1.95
24634--24701
19
3.6
19
97
0
127
44
16
25
14
1.85
24575--24736
71
2.2
72
83
6
193
40
17
24
16
1.90
24744--24807
33
1.9
34
87
3
94
12
25
21
40
1.88
24909--24945
14
2.6
14
86
0
56
48
21
0
29
1.50
26365--26403
21
1.9
20
89
5
60
23
15
35
25
1.94
26890--26957
20
3.4
20
85
0
82
36
22
19
22
1.95
26996--27042
20
2.3
20
85
0
58
38
12
19
29
1.89
27083--27206
20
6.5
20
82
10
161
20
20
20
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28997--29036
20
2.0
20
100
0
80
55
20
15
10
1.68
29110--29158
20
2.5
20
79
0
62
20
22
24
32
1.98
29716--29790
20
3.8
20
89
0
123
21
18
21
38
1.93
29714--29790
40
1.9
40
94
0
136
23
18
20
37
1.94
30675--30850
90
2.0
88
93
2
298
37
10
6
45
1.65
35380--35413
12
2.8
12
86
0
50
79
2
2
14
0.97
37737--37834
42
2.4
40
75
13
92
33
19
19
27
1.96
38000--38107
42
2.6
41
75
4
99
33
20
18
27
1.96
37318--38165
273
3.1
274
85
5
1178
35
19
16
29
1.93
40163--40272
13
8.8
13
71
16
81
1
16
1
80
0.90
40163--40261
19
5.3
19
81
11
107
2
17
1
79
0.88
43465--43489
13
1.9
13
100
0
50
56
0
0
44
0.99
43490--43528
1
39.0
1
84
0
51
92
2
0
5
0.46
43485--43525
8
5.1
8
88
5
57
87
2
0
9
0.62
45489--45521
14
2.3
15
89
5
50
42
15
3
39
1.62
47494--47556
29
2.2
29
94
0
108
30
33
6
30
1.82
50738--50774
12
2.9
13
88
11
51
67
0
13
18
1.23
52342--52404
23
2.7
23
92
0
99
25
17
17
39
1.91

Tables:   1

The End!