genome.fa.s6312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006312.1 Hibiscus syriacus cultivar Beakdansim tig00015080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111832

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4907--4936	13	2.3	13	100	0	60	10	23	33	33	1.88
7919--7952	14	2.4	15	85	14	54	50	0	0	50	1.00
8863--8949	21	4.0	22	76	11	72	47	1	1	50	1.16
8924--8956	11	2.8	12	86	9	50	54	0	0	45	0.99
13824--13866	21	2.0	22	81	4	52	25	13	4	55	1.58
16224--16305	42	2.0	42	90	0	128	32	20	21	24	1.98
16268--16429	43	3.8	42	81	10	177	32	17	24	25	1.97
17731--17761	2	15.5	2	100	0	62	48	0	0	51	1.00
20184--20641	41	11.1	41	80	4	413	34	17	19	29	1.95
20184--20642	83	5.6	82	80	4	426	34	17	19	28	1.95
20184--20641	165	2.8	164	82	4	462	34	17	19	29	1.95
22162--22218	29	2.0	29	89	6	89	24	42	19	14	1.88
22233--22271	18	2.1	19	95	4	71	0	56	17	25	1.41
22391--22457	33	2.0	33	97	0	125	32	11	28	26	1.92
22502--22564	26	2.3	27	86	10	92	50	6	34	7	1.57
22559--22605	14	3.5	13	77	11	51	57	0	40	2	1.11
23065--23095	15	2.1	14	94	5	53	38	0	6	54	1.26
25308--25355	14	3.6	14	81	16	66	47	16	0	35	1.47
25307--25355	25	2.0	25	95	0	89	46	16	0	36	1.47
25307--25377	25	3.1	22	84	10	63	50	11	0	38	1.38
25506--26190	60	11.0	60	68	18	327	44	11	1	42	1.50
25544--25693	70	2.1	70	97	0	282	45	11	0	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25484--25859	130	3.1	119	84	10	407	45	12	0	42	1.41
25625--25800	49	3.7	49	93	3	290	45	12	0	42	1.42
25547--25714	70	2.4	70	93	4	268	46	11	0	42	1.39
25933--25980	14	3.6	14	78	16	57	47	14	0	37	1.44
25932--26038	25	4.6	22	72	17	74	48	12	0	39	1.40
25952--26063	48	2.3	49	90	3	172	47	11	0	41	1.40
26009--26077	36	1.9	36	82	5	86	46	11	0	42	1.40
26021--26123	35	3.2	35	63	30	93	47	8	0	43	1.34
26047--26137	21	4.5	21	72	18	84	45	8	0	46	1.34
25932--26155	21	10.4	21	66	22	58	46	10	0	42	1.38
28674--28735	28	2.1	30	94	5	110	56	12	0	30	1.37
29160--29202	22	2.0	22	100	0	86	27	27	20	23	1.99
29266--29348	29	2.9	29	85	0	94	15	25	37	21	1.93
29358--29391	16	2.1	16	100	0	68	5	11	55	26	1.58
44664--44835	19	9.6	18	70	18	85	73	0	16	8	1.11
44667--44741	22	3.3	22	76	14	64	76	0	16	8	1.02
44662--44758	38	2.6	36	78	12	106	74	0	15	10	1.07
44727--44829	38	2.7	37	75	16	104	72	0	16	9	1.15
46128--46199	37	1.9	38	94	2	128	37	20	20	20	1.95
46212--46647	55	7.9	55	87	4	517	28	16	24	30	1.97
52979--53026	23	2.1	23	100	0	96	27	16	27	29	1.97
54346--54378	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58076--58109	17	2.0	17	88	0	50	32	0	11	55	1.36
60572--60656	30	2.8	32	84	8	106	41	3	17	37	1.67
60667--60713	22	2.1	22	85	14	62	48	0	2	48	1.13
60677--60717	19	2.1	20	90	4	66	58	0	0	41	0.98
62397--62431	15	2.3	15	95	0	61	48	2	0	48	1.16
62946--62986	21	2.0	20	85	4	55	39	0	4	56	1.21
70098--70148	20	2.6	19	81	12	59	21	17	33	27	1.96
70218--70266	20	2.5	19	80	12	55	22	18	32	26	1.97
70025--70270	119	2.1	119	92	0	420	31	16	24	28	1.96
70405--70451	20	2.5	19	86	10	69	38	27	12	21	1.90
71775--71835	22	2.8	22	100	0	122	36	0	13	50	1.41
71860--71918	31	1.9	31	92	0	100	42	10	6	40	1.65
72511--72572	32	2.0	31	87	3	88	43	11	0	45	1.40
76637--76707	7	10.9	7	78	18	82	29	32	0	38	1.58
76637--76707	13	5.5	13	85	9	92	29	32	0	38	1.58
86400--86449	25	2.0	25	88	0	73	36	22	16	26	1.94
87059--87123	24	2.8	24	73	19	64	32	23	24	20	1.98
88151--88201	25	2.0	26	81	11	61	41	23	1	33	1.66
95260--95324	33	2.0	32	87	3	94	44	16	6	32	1.73
95769--95828	26	2.3	26	80	11	61	31	6	16	45	1.74
104114--104155	13	3.3	13	86	6	68	16	21	45	16	1.86
104134--104185	18	2.9	18	94	0	95	17	15	48	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104118--104154	12	2.9	13	88	8	58	18	18	45	16	1.85
104198--104249	9	5.3	10	84	11	72	36	30	19	13	1.90
111296--111351	29	1.9	29	82	7	69	41	21	8	28	1.83
111420--111465	17	2.6	18	86	10	67	19	13	47	19	1.81
111482--111529	9	4.9	10	82	12	64	37	27	20	14	1.92
111487--111529	21	2.1	21	87	8	63	41	25	18	13	1.88

Tables:   1

The End!