Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006313.1 Hibiscus syriacus cultivar Beakdansim tig00015086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63356

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
392--422
16
1.9
16
93
0
53
48
0
0
51
1.00
392--463
19
3.7
19
74
24
62
47
1
1
50
1.18
10972--11001
15
2.0
15
100
0
60
20
26
20
33
1.97
16221--16248
4
7.0
4
100
0
56
25
0
75
0
0.81
16872--16906
2
17.5
2
100
0
70
51
0
48
0
1.00
22006--22081
31
2.5
31
88
0
107
28
10
11
48
1.73
23247--23278
15
2.1
15
94
0
55
78
0
12
9
0.97
24492--24535
10
4.5
10
88
2
63
72
0
6
20
1.07
24488--24533
20
2.3
20
96
0
83
73
0
6
19
1.04
24488--24535
15
3.3
15
85
2
62
72
0
6
20
1.05
24611--24842
108
2.1
109
79
15
239
45
8
4
41
1.55
24607--24789
73
2.6
72
80
10
198
43
8
4
43
1.55
25558--26385
250
3.3
250
86
3
1041
23
21
25
29
1.99
25484--26385
165
5.4
165
87
3
946
23
21
25
30
1.99
29726--29770
19
2.4
19
92
3
74
66
8
13
11
1.44
31614--31645
15
2.1
15
94
0
55
78
0
12
9
0.97
32860--32903
10
4.5
10
88
2
63
72
0
6
20
1.07
32856--32901
20
2.3
20
96
0
83
73
0
6
19
1.04
32856--32903
15
3.3
15
85
2
62
72
0
6
20
1.05
32977--33159
73
2.6
72
80
10
198
43
8
4
43
1.55
37609--37642
16
2.3
15
90
10
52
26
0
0
73
0.83
48292--48332
16
2.6
16
82
17
50
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49305--49345
20
2.1
19
86
4
55
39
2
0
58
1.11
49406--49449
15
2.6
17
79
13
56
36
0
2
61
1.09
49406--49448
3
13.3
3
90
4
50
34
0
2
62
1.08
49364--49474
46
2.2
51
81
12
124
33
3
7
55
1.44
49506--49565
18
3.4
18
76
2
68
25
10
0
65
1.24
60736--60764
1
29.0
1
100
0
58
100
0
0
0
0.00
61546--62048
104
4.8
105
98
0
965
32
25
19
22
1.97
61546--62048
209
2.4
209
98
0
963
32
25
19
22
1.97
62128--62169
20
2.1
20
90
0
66
26
23
16
33
1.96
62376--62416
16
2.6
16
82
17
50
43
0
0
56
0.99

Tables:   1

The End!