genome.fa.s6314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006314.1 Hibiscus syriacus cultivar Beakdansim tig00015087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77488

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3065--3422	83	4.3	82	78	5	317	30	20	16	33	1.94
5625--5654	14	2.1	15	93	6	53	76	6	0	16	0.99
9928--9967	2	20.0	2	94	0	71	50	2	0	47	1.14
21575--21652	27	2.9	27	86	3	95	16	24	21	37	1.94
21605--21668	27	2.4	27	81	0	74	14	29	23	32	1.94
21629--21771	27	5.3	27	84	0	151	13	27	23	34	1.93
29345--29817	181	2.6	181	87	3	655	42	14	16	26	1.86
29738--29784	20	2.4	19	82	10	67	53	10	17	19	1.72
29747--29789	20	2.3	19	88	11	63	51	11	16	20	1.75
32020--32084	21	3.1	21	79	0	76	38	13	30	16	1.88
32118--32178	32	1.9	32	89	0	95	29	0	47	22	1.52
33972--34020	19	2.6	19	93	0	80	30	2	10	57	1.43
34139--35305	198	5.9	198	96	0	2081	37	15	16	31	1.90
36772--36854	12	6.9	12	84	0	85	34	8	34	21	1.84
36769--36830	18	3.4	18	79	0	79	37	9	35	17	1.83
36769--36860	6	15.3	6	77	0	58	36	8	33	20	1.84
36772--36848	36	2.1	36	90	0	118	35	9	35	20	1.85
36784--36864	9	9.0	9	73	0	63	35	7	33	23	1.83
38365--39036	183	3.7	183	96	0	1202	34	14	16	34	1.89
41505--41569	25	2.6	25	80	0	85	35	9	13	41	1.77
41915--41991	23	3.5	22	84	7	93	33	3	22	40	1.72
42401--42473	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41569--42640	486	2.2	485	97	1	2036	38	7	12	41	1.71
42743--42799	25	2.3	25	90	0	87	33	7	19	40	1.78
43182--43218	18	2.1	18	89	0	56	29	8	10	51	1.65
43174--43220	24	2.0	24	91	0	76	31	6	14	46	1.70
43477--43563	39	2.2	39	95	0	156	48	20	13	17	1.81
43968--44040	23	3.2	23	88	0	101	34	4	21	39	1.73
44847--44889	22	1.9	23	85	4	61	41	11	9	37	1.74
48448--48493	24	1.9	24	86	8	67	26	2	23	47	1.63
59249--59279	13	2.5	13	94	5	55	74	12	6	6	1.21
62958--63139	56	3.3	55	92	3	301	27	18	17	36	1.93
73796--73883	20	4.4	20	91	0	149	39	14	20	25	1.90
74720--74773	24	2.2	24	93	0	90	20	18	20	40	1.91
77037--77071	18	1.9	18	94	0	61	54	25	2	17	1.57
77410--77458	20	2.5	20	86	0	71	32	26	20	20	1.97
77368--77488	54	2.2	54	85	0	152	36	22	16	24	1.94

Tables:   1

The End!