genome.fa.s6316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006316.1 Hibiscus syriacus cultivar Beakdansim tig00015091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174431

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7231--7308	25	2.9	27	79	14	90	29	23	20	26	1.99
11503--11995	117	4.3	114	80	6	435	28	20	12	38	1.89
11610--11995	117	3.3	117	82	5	455	28	20	13	37	1.91
12338--12454	36	3.3	36	71	7	112	38	11	20	29	1.87
31585--31615	3	10.0	3	93	6	53	67	0	0	32	0.91
32464--32523	23	2.6	23	97	0	111	38	20	18	23	1.93
42649--42723	21	3.6	21	73	22	61	40	1	4	54	1.27
42666--42723	20	2.9	20	77	7	73	37	0	5	56	1.21
44834--44942	53	2.1	53	84	6	141	28	15	16	39	1.89
64347--64393	24	2.0	24	100	0	94	34	12	10	42	1.78
64728--64842	61	1.9	61	81	3	142	25	16	26	31	1.96
76736--76786	22	2.4	22	81	12	61	60	11	5	21	1.52
77563--77665	53	1.9	53	88	3	154	27	15	16	40	1.88
83158--83888	84	8.7	84	81	4	859	30	25	19	24	1.98
83158--83890	252	2.9	252	92	1	1175	30	25	19	24	1.98
84431--84456	13	2.0	13	100	0	52	23	30	15	30	1.95
84747--85004	39	6.9	37	76	14	205	41	2	7	49	1.43
85007--85082	4	17.8	4	79	12	64	23	3	0	72	1.01
85020--85079	5	12.4	5	75	18	56	21	1	0	76	0.87
85020--85085	13	5.1	13	75	18	50	22	1	0	75	0.88
91429--92140	84	8.5	84	80	3	781	30	25	18	25	1.98
91429--92223	168	4.7	168	81	5	845	31	25	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91429--92175	252	3.0	252	90	1	1131	30	25	18	25	1.98
92702--92727	13	2.0	13	100	0	52	23	30	15	30	1.95
92868--93263	38	10.8	35	77	11	146	40	3	8	47	1.49
93016--93268	38	6.7	38	79	10	243	42	2	7	47	1.46
93016--93268	77	3.3	77	80	10	247	42	2	7	47	1.46
93293--93322	5	6.2	5	96	3	53	20	0	0	80	0.72
93293--93342	13	3.7	14	80	20	61	22	2	0	76	0.89
93280--93342	4	14.8	4	80	12	56	23	4	0	71	1.05
135266--135324	18	3.3	18	67	9	57	32	3	15	49	1.61
135203--135270	2	34.5	2	97	2	129	50	0	0	50	1.00
135246--135336	36	2.5	36	89	10	132	39	3	9	47	1.53
136297--136748	136	3.3	136	79	5	450	45	13	12	28	1.80
136287--136761	138	3.4	136	78	6	476	45	13	12	28	1.79
138933--139008	30	2.6	30	95	2	136	23	0	39	36	1.55
152155--152458	101	3.0	100	92	0	500	28	26	18	26	1.98
152863--152915	25	2.1	25	92	0	88	47	15	0	37	1.45
158473--158501	15	1.9	15	100	0	58	20	34	13	31	1.92
166629--166689	21	3.2	21	65	29	64	31	4	21	42	1.74
166621--166740	35	3.3	36	91	5	190	30	5	21	43	1.74
169721--169795	23	3.3	23	74	3	73	30	21	22	25	1.99
169805--170018	100	2.1	102	93	1	369	37	23	13	25	1.92

Tables:   1

The End!