genome.fa.s6319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006319.1 Hibiscus syriacus cultivar Beakdansim tig00015099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74163

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159--201	13	3.4	12	78	12	50	39	6	23	30	1.81
672--781	47	2.4	46	82	8	134	31	22	7	38	1.82
778--820	20	2.2	20	86	0	59	58	18	4	18	1.56
885--1009	60	2.1	59	89	1	187	30	23	17	28	1.97
8367--8409	20	2.2	20	86	0	59	58	18	4	18	1.56
8475--8600	60	2.1	59	85	1	162	29	23	17	29	1.97
12670--12802	29	4.6	28	86	4	167	48	21	0	28	1.55
12690--12798	57	1.9	57	90	3	175	50	19	0	30	1.48
14887--14965	29	2.8	26	73	16	52	81	0	7	11	0.89
14879--14986	35	3.1	34	73	16	96	81	0	7	11	0.87
14927--14985	27	2.2	27	85	11	77	81	0	8	10	0.88
14895--14981	44	2.0	44	84	8	115	79	0	9	11	0.94
16210--16653	134	3.3	133	76	6	423	34	20	14	30	1.93
16847--16890	3	14.0	3	86	9	61	34	0	2	63	1.07
16832--16875	19	2.3	19	84	0	52	38	2	0	59	1.10
16847--16890	22	2.0	22	90	0	70	34	0	2	63	1.07
18567--18617	23	2.2	23	82	6	59	45	0	3	50	1.20
18646--18951	141	2.1	145	78	10	317	34	12	14	37	1.84
20241--20331	30	3.0	30	98	1	173	39	9	14	36	1.79
20584--20648	26	2.5	26	78	7	71	49	1	0	49	1.10
20759--20821	27	2.3	27	86	10	85	47	0	1	50	1.10
21084--21166	35	2.3	35	80	10	89	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21556--21688	63	2.1	63	95	0	239	30	31	7	30	1.85
23007--23078	33	2.2	34	100	0	130	11	15	55	18	1.68
23022--23079	18	3.4	18	68	22	61	13	15	55	15	1.70
23184--23208	13	1.9	13	100	0	50	36	0	0	64	0.94
25788--26408	311	2.0	312	98	0	1199	28	15	19	37	1.92
30282--30360	35	2.3	34	91	2	122	50	1	1	46	1.17
30282--30360	11	6.9	11	72	18	63	50	1	1	46	1.17
35555--35647	42	2.2	42	96	0	168	27	5	34	32	1.80
38510--38539	12	2.5	12	100	0	60	46	23	20	10	1.80
39375--39494	64	1.9	64	92	0	204	43	12	12	31	1.80
39542--40226	196	3.5	196	85	4	866	32	15	13	38	1.87
39542--40226	197	3.5	194	83	6	828	32	15	13	38	1.87
42708--42755	19	2.5	19	86	0	69	54	6	8	31	1.55
44369--45762	199	7.0	198	83	4	1642	31	16	13	37	1.88
44369--45762	397	3.5	397	87	2	1915	31	16	13	37	1.88
44369--45762	596	2.3	595	83	4	1739	31	16	13	37	1.88
53076--53617	59	9.2	58	86	3	694	36	17	11	33	1.87
54055--54098	17	2.6	17	88	0	61	38	18	6	36	1.77
59499--59840	59	5.8	59	90	2	555	34	20	11	33	1.89
59491--59840	175	2.0	176	91	3	573	34	20	11	33	1.89
63748--63791	1	44.0	1	81	0	52	90	4	4	0	0.53
63739--63791	24	2.2	24	86	0	70	88	5	3	1	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63782--63882	45	2.2	46	96	1	186	43	5	21	28	1.76
68907--68949	17	2.5	17	96	0	77	34	18	6	39	1.78
71237--71442	72	2.9	71	81	3	220	24	8	38	28	1.85
71211--71457	72	3.4	71	77	5	212	23	10	36	29	1.88
73046--73101	23	2.5	22	80	13	60	71	3	8	16	1.25

Tables:   1

The End!