genome.fa.s6320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006320.1 Hibiscus syriacus cultivar Beakdansim tig00015100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89180

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373--1412	19	2.1	19	90	4	62	55	17	15	12	1.70
1382--1440	19	3.1	19	82	4	64	42	23	16	16	1.89
1410--1447	20	1.9	20	100	0	76	31	26	21	21	1.98
2060--2197	20	6.9	20	84	6	154	25	23	23	27	2.00
2060--2172	60	1.9	60	88	3	174	25	23	25	24	2.00
2189--2240	21	2.4	22	70	6	52	36	17	25	21	1.94
2408--2440	16	2.1	16	94	0	57	18	15	36	30	1.91
5228--5268	19	2.0	21	86	9	59	60	4	26	7	1.43
9726--9978	37	7.2	36	70	20	176	28	17	11	41	1.85
10335--10402	12	5.7	12	74	6	66	76	0	7	16	1.00
10324--10404	8	10.0	8	77	11	58	76	0	7	16	1.00
10348--10402	27	2.0	27	86	6	76	78	0	5	16	0.93
10356--10401	4	11.8	4	81	9	51	78	0	4	17	0.91
11997--13477	106	14.0	106	89	1	2106	23	18	24	33	1.96
14293--14369	22	3.5	22	94	0	136	20	14	27	37	1.91
14974--15037	20	3.4	18	81	12	76	1	12	3	82	0.85
14973--15034	26	2.4	25	81	7	70	1	12	3	82	0.87
14996--15029	18	1.9	17	94	5	59	0	14	2	82	0.79
14978--15036	19	3.1	18	83	11	64	1	13	3	81	0.90
16199--16234	8	4.6	8	89	6	56	55	13	16	13	1.69
16199--16234	15	2.3	15	90	4	54	55	13	16	13	1.69
19482--19515	8	4.2	8	100	0	68	76	0	11	11	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19507--19559	6	8.5	6	82	14	63	79	0	5	15	0.91
19517--19571	10	5.6	10	76	20	62	80	0	1	18	0.81
19493--19571	31	2.5	31	80	10	88	77	0	6	16	0.97
19656--19722	29	2.3	30	76	5	75	71	7	0	20	1.10
19869--19899	2	15.5	2	93	0	53	51	3	0	45	1.17
20459--20560	37	2.8	37	86	0	141	30	13	15	40	1.86
20681--20737	27	2.1	27	93	6	98	38	15	10	35	1.82
20740--20986	84	2.9	84	87	1	352	31	23	20	24	1.98
21569--21614	3	15.0	3	86	4	65	32	0	4	63	1.14
21565--21622	28	2.1	28	90	0	89	34	0	3	62	1.12
23992--24030	20	2.0	20	84	0	51	64	20	7	7	1.45
32392--32591	18	11.1	18	68	14	126	41	6	8	44	1.60
32366--32533	51	3.1	51	71	14	135	42	5	6	44	1.54
32403--32615	33	6.5	33	76	15	219	41	6	7	43	1.60
32404--32518	58	2.0	58	96	0	212	42	7	6	42	1.60
32477--32534	17	3.5	17	69	21	59	46	6	5	41	1.53
32403--32577	91	1.9	93	89	4	273	41	6	8	43	1.61
32393--32685	162	1.8	161	81	8	369	40	5	9	44	1.60
32651--32723	20	3.6	20	80	9	69	45	4	6	43	1.49
32702--32827	31	4.4	30	71	22	117	42	6	10	40	1.64
32718--32905	18	10.2	19	68	26	63	42	6	10	41	1.64
32685--32807	53	2.4	52	88	2	185	44	4	9	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32802--32918	38	3.0	38	84	12	155	41	6	9	41	1.64
32804--32918	18	5.9	18	76	18	106	41	6	9	41	1.64
32944--33028	33	2.7	33	85	5	104	48	3	5	42	1.44
32979--33052	20	3.5	20	77	16	85	52	1	5	40	1.33
32942--33012	31	2.3	30	83	11	90	43	4	7	45	1.50
32993--33069	25	3.0	25	75	14	75	49	1	6	42	1.36
33008--33075	29	2.3	30	78	14	79	52	0	5	41	1.25
32846--33063	103	2.1	99	80	13	228	44	4	8	43	1.55
33103--33166	22	2.8	22	85	4	83	50	6	1	42	1.37
33169--33248	9	7.8	10	70	22	51	47	2	2	47	1.29
33114--33272	40	4.0	40	72	16	125	45	5	3	45	1.43
33292--33407	27	4.4	28	81	11	86	43	2	5	49	1.38
33342--33405	2	32.0	2	100	0	128	50	0	0	50	1.00
33428--34240	209	3.8	213	90	4	1177	29	11	8	50	1.68
51483--51534	21	2.5	22	75	12	56	13	5	5	75	1.18
51534--51570	2	19.5	2	83	10	51	45	0	2	51	1.15
51562--51634	36	2.0	36	81	5	85	30	2	0	67	1.05
51587--51637	18	2.8	18	78	3	57	27	1	0	70	0.98
51710--51829	53	2.3	52	80	13	131	22	4	2	70	1.16
51760--51830	9	7.7	9	77	12	72	19	2	1	76	0.99
51760--51830	28	2.5	29	86	11	103	19	2	1	76	0.99
54860--54910	22	2.5	20	83	6	57	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56712--56741	15	2.0	15	93	0	51	33	3	6	56	1.42
58238--58306	2	34.5	2	100	0	138	50	0	0	49	1.00
59018--59061	3	14.0	3	81	9	52	36	0	0	63	0.95
59028--59079	13	3.8	13	81	18	54	30	1	0	67	1.02
59018--59061	16	2.8	16	92	0	70	36	0	0	63	0.95
60314--60360	23	2.0	25	84	16	64	12	6	2	78	1.02
64043--65028	106	9.3	106	95	0	1711	34	25	18	22	1.96
69244--69306	31	2.0	32	90	9	103	65	14	0	20	1.27
69778--69820	18	2.4	18	88	0	59	69	0	6	23	1.12
71093--71189	42	2.3	41	84	5	115	29	17	18	34	1.94
78563--78655	21	4.3	21	78	10	91	38	20	39	1	1.60
79012--79134	43	2.8	43	81	6	133	27	24	17	30	1.97
80910--80943	17	2.1	16	88	5	50	14	8	0	76	1.01

Tables:   1

The End!