genome.fa.s6321.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006321.1 Hibiscus syriacus cultivar Beakdansim tig00015101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133192

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10218--10264	21	2.3	21	82	7	62	72	2	0	25	0.96
10219--10270	21	2.5	21	81	6	61	71	1	0	26	0.97
11123--11166	5	8.8	5	82	9	54	79	0	6	13	0.92
20209--20244	2	18.0	2	100	0	72	50	0	0	50	1.00
22781--22840	20	3.1	19	76	7	57	58	3	0	38	1.15
23002--23046	13	3.3	13	82	17	56	75	0	2	22	0.91
23626--23660	15	2.4	15	90	4	54	62	2	0	34	1.10
24189--24260	36	2.0	36	100	0	144	33	19	25	22	1.97
32591--32731	64	2.2	64	83	2	167	33	21	18	26	1.96
33039--33074	12	3.0	12	91	0	63	33	5	25	36	1.79
33039--33107	24	2.8	26	83	12	85	37	5	24	31	1.79
39498--39638	64	2.2	64	83	2	167	32	21	19	26	1.97
39946--39981	12	3.0	12	91	0	63	33	5	25	36	1.79
39946--40014	24	2.8	26	83	12	85	37	5	24	31	1.79
46355--46457	45	2.3	45	83	6	120	35	19	15	29	1.93
46400--46543	64	2.2	64	82	4	166	33	20	18	27	1.96
46848--46883	12	3.0	12	91	0	63	33	5	25	36	1.79
48105--48148	19	2.4	19	80	3	54	22	22	18	36	1.95
54478--54534	22	2.7	21	70	22	55	70	0	12	17	1.17
55341--55753	36	11.3	34	73	17	148	44	5	2	47	1.40
55375--55756	38	10.4	36	80	8	276	44	5	2	47	1.41
56319--58143	84	22.0	83	78	6	1755	25	19	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56319--58143	165	11.0	163	80	6	1706	25	19	24	30	1.98
56292--58156	249	7.5	246	86	3	2116	25	19	24	30	1.98
63374--63401	9	3.1	9	100	0	56	78	0	0	21	0.75
63504--63544	15	2.5	17	88	11	59	68	0	14	17	1.22
64886--65252	36	9.9	36	82	8	398	44	5	4	46	1.45
64829--65271	111	4.0	109	79	12	399	45	5	3	45	1.45
65288--65312	11	2.3	11	100	0	50	76	0	0	24	0.80
66418--66467	22	2.3	22	83	13	59	58	2	0	40	1.10
68564--68609	2	23.0	2	100	0	92	50	0	0	50	1.00
70400--70474	38	2.0	38	92	5	125	34	16	8	41	1.77
70603--70711	47	2.3	47	80	0	119	54	13	7	24	1.65
71861--72153	94	3.1	94	94	1	514	38	18	18	24	1.92
72094--72212	60	2.0	60	100	0	238	41	16	16	25	1.89
91052--91194	42	3.4	42	75	9	128	39	8	9	41	1.68
91165--91255	29	3.1	29	90	0	146	31	13	24	30	1.93
91550--91586	18	2.1	18	90	5	58	37	0	0	62	0.96
99268--99293	5	5.2	5	100	0	52	42	19	0	38	1.51
99551--99579	5	6.0	5	92	8	51	37	0	0	62	0.96
99725--99758	17	2.0	17	88	0	50	41	0	0	58	0.98
100850--100940	10	8.1	10	71	21	56	57	17	12	13	1.66
100850--100940	23	3.9	23	78	2	92	57	17	12	13	1.66
101199--101251	14	4.1	14	74	18	60	56	16	11	15	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101199--101288	24	3.8	24	75	11	96	52	17	13	16	1.75
101772--101820	22	2.2	22	100	0	98	42	12	8	36	1.72
104098--104148	27	1.9	27	84	11	70	35	5	5	52	1.50
104899--105012	50	2.3	51	87	1	158	18	32	29	19	1.96
105183--105211	14	2.1	14	93	6	51	27	6	0	65	1.18
105286--105506	110	2.0	111	90	0	345	36	7	8	47	1.63
108922--108962	13	3.2	13	82	10	57	60	0	0	39	0.96
109271--109374	47	2.2	49	87	6	151	29	21	24	25	1.99
109285--109389	49	2.2	47	84	6	140	30	19	23	26	1.98
109401--109533	51	2.6	51	84	1	169	19	32	31	16	1.94
116994--117566	285	2.0	285	92	0	941	31	11	28	28	1.92
117681--118106	213	2.0	213	91	0	692	36	13	23	25	1.92
132149--132397	133	1.9	135	89	3	396	32	15	22	29	1.95

Tables:   1

The End!