Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006322.1 Hibiscus syriacus cultivar Beakdansim tig00015106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61340

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5174--5199
3
8.7
3
100
0
52
0
34
0
65
0.93
5334--5403
36
1.9
36
97
0
131
18
22
25
32
1.97
9284--9555
86
3.2
85
81
6
284
50
3
6
39
1.47
9543--9647
25
4.2
25
63
11
63
49
4
3
41
1.42
9534--9689
74
2.1
75
98
1
305
46
5
2
44
1.40
15634--15679
23
2.0
23
91
0
74
32
23
6
36
1.81
17575--17632
29
2.0
28
86
3
80
37
10
0
51
1.36
18607--18695
40
2.2
39
77
13
92
48
3
0
48
1.18
18783--18851
19
3.6
18
71
21
52
49
1
1
47
1.19
18846--18890
23
2.0
23
86
0
63
53
2
2
42
1.25
18985--19023
19
2.0
20
85
5
53
61
0
0
38
0.96
19199--19239
14
2.9
14
88
3
55
41
19
9
29
1.83
19243--19272
14
2.1
14
93
0
51
36
20
6
36
1.79
23710--23766
25
2.3
25
96
0
105
43
0
0
56
0.99
24346--24383
6
6.5
6
87
6
60
44
0
0
55
0.99
28812--28887
30
2.5
31
95
2
136
43
10
14
31
1.79
33852--33893
16
2.6
16
100
0
84
38
26
23
11
1.90
37932--38014
29
2.8
29
78
8
87
33
14
6
45
1.69
48689--48721
16
2.1
16
88
11
50
57
0
0
42
0.98
53104--53133
13
2.3
13
94
0
51
60
6
3
30
1.39
53480--53828
83
4.0
82
72
14
281
25
19
13
42
1.87
54370--54415
22
2.1
22
87
0
65
41
17
8
32
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55940--55975
17
2.1
17
100
0
72
30
16
5
47
1.70
58821--58871
24
2.1
24
85
7
68
23
1
13
60
1.43
59342--59381
11
3.6
11
79
0
53
17
15
0
67
1.23
59339--59391
22
2.5
22
93
3
90
16
13
0
69
1.18
59841--59871
16
1.9
16
93
0
53
77
0
6
16
0.97
60334--60382
23
2.1
23
85
7
64
59
14
2
24
1.46

Tables:   1

The End!