Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006323.1 Hibiscus syriacus cultivar Beakdansim tig00015109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70052

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3845--3923
28
2.8
28
86
3
97
18
18
24
37
1.94
9987--10023
18
2.1
18
100
0
74
40
21
10
27
1.86
10337--10413
34
2.3
34
88
0
118
45
19
9
25
1.80
12233--12278
25
1.9
25
86
8
69
47
8
8
34
1.65
12233--12280
23
2.1
22
81
14
53
50
8
8
33
1.63
13172--13213
16
2.7
16
79
17
52
38
7
9
45
1.64
16089--16141
9
4.9
12
74
25
64
47
0
0
52
1.00
16089--16141
21
2.5
21
100
0
106
47
0
0
52
1.00
16484--16512
2
14.5
2
100
0
58
0
0
48
51
1.00
21249--21291
15
3.0
14
83
12
52
32
30
4
32
1.78
21254--21291
15
2.5
15
95
0
67
28
34
5
31
1.80
25429--25453
8
3.1
8
100
0
50
0
0
52
48
1.00
35376--35422
24
2.0
24
95
0
85
44
0
19
36
1.51
40663--40742
23
3.7
22
86
6
101
23
32
25
18
1.97
47325--47370
23
2.0
24
82
4
58
41
0
2
56
1.11
49238--49286
26
2.0
24
84
15
64
42
6
14
36
1.70
49528--49596
35
2.0
35
100
0
138
44
20
5
28
1.74
52026--52140
60
1.9
60
85
3
160
30
15
20
33
1.93
58005--58206
43
4.7
43
84
2
273
28
25
20
25
1.99
58008--58175
85
2.0
86
91
1
275
30
24
19
25
1.98
58005--58206
85
2.4
86
83
3
273
28
25
20
25
1.99
60360--60409
3
17.0
3
79
4
57
62
2
0
36
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62691--63109
126
3.2
129
82
6
427
24
15
31
28
1.96
63234--63276
21
2.1
20
82
4
50
46
16
16
20
1.84
63435--63524
36
2.5
36
81
5
101
36
14
17
31
1.90
64527--64586
8
7.2
8
80
15
61
80
0
13
6
0.91
64527--64586
16
3.6
16
79
14
68
80
0
13
6
0.91
65332--65399
14
4.9
14
79
15
70
1
11
5
80
0.94
65332--65422
42
2.2
43
82
11
118
1
13
5
80
0.94
65331--65409
28
2.8
27
81
14
81
1
11
6
81
0.93
65350--65415
14
4.4
15
80
12
59
1
10
6
81
0.92
65330--65422
19
4.8
18
72
16
71
1
12
5
80
0.93
65330--65418
29
2.9
32
76
15
91
1
12
5
80
0.93

Tables:   1

The End!