Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006324.1 Hibiscus syriacus cultivar Beakdansim tig00015112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151099
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:399 original size:17 final size:16
Alignment explanation
Indices: 377--408 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
367 TGTTTGTAAT
377 AATAATATTATAAAAAC
1 AATAATA-TATAAAAAC
394 AATAATATATAAAAA
1 AATAATATATAAAAA
409 TACGGAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (16 bp):
AATAATATATAAAAAC
Found at i:3449 original size:22 final size:23
Alignment explanation
Indices: 3422--3470 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
3412 AAACGGTCGA
3422 AAAACGTACCA-AAAGGTAGAA-G
1 AAAACGTACCATAAAGGTA-AAGG
*
3444 AAAACGTGCCATAAAGGTAAAGG
1 AAAACGTACCATAAAGGTAAAGG
3467 AAAA
1 AAAA
3471 TGTGTCATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.55, C:0.12, G:0.22, T:0.10
Consensus pattern (23 bp):
AAAACGTACCATAAAGGTAAAGG
Found at i:3459 original size:23 final size:24
Alignment explanation
Indices: 3422--3486 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 24
3412 AAACGGTCGA
*
3422 AAAACGTACCA-AAAGGTAGAA-G
1 AAAACGTGCCATAAAGGTAGAAGG
3444 AAAACGTGCCATAAAGGTA-AAGG
1 AAAACGTGCCATAAAGGTAGAAGG
* * *
3467 AAAATGTGTCATACAGGTAG
1 AAAACGTGCCATAAAGGTAG
3487 GGATGGCAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.33
23 24 0.67
ACGTcount: A:0.48, C:0.12, G:0.25, T:0.15
Consensus pattern (24 bp):
AAAACGTGCCATAAAGGTAGAAGG
Found at i:5335 original size:2 final size:2
Alignment explanation
Indices: 5328--5363 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
5318 TTTTATAGAA
5328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5364 TATGATGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5569 original size:14 final size:14
Alignment explanation
Indices: 5552--5579 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
5542 CTTTAAAAAA
5552 TATAATTTATTAAT
1 TATAATTTATTAAT
5566 TATAATTTATTAAT
1 TATAATTTATTAAT
5580 GGTTAACCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATAATTTATTAAT
Found at i:13633 original size:37 final size:37
Alignment explanation
Indices: 13579--13683 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
13569 CCTTTTCGTC
*
13579 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* ** * *
13616 TTGTTAGGATTCAAACTCCTAAAAATATGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
13653 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
13684 CCACAAGCAC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:14195 original size:23 final size:24
Alignment explanation
Indices: 14149--14201 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
14139 TTGATTTTTT
14149 TACATTATATATTATTATTATATA
1 TACATTATATATTATTATTATATA
*
14173 TACA-TATATATTTTTTATT-TATA
1 TACATTATATA-TTATTATTATATA
*
14196 TTCATT
1 TACATT
14202 TGGTTATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (24 bp):
TACATTATATATTATTATTATATA
Found at i:14420 original size:21 final size:22
Alignment explanation
Indices: 14396--14437 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14386 TCATTATATG
14396 TATACTTT-TATA-TTTGGTTTA
1 TATA-TTTATATATTTTGGTTTA
*
14417 TATATTTATTTATTTTGGTTT
1 TATATTTATATATTTTGGTTT
14438 TTGGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 3 0.17
21 7 0.39
22 8 0.44
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (22 bp):
TATATTTATATATTTTGGTTTA
Found at i:14556 original size:4 final size:4
Alignment explanation
Indices: 14543--14601 Score: 59
Period size: 4 Copynumber: 14.2 Consensus size: 4
14533 TATATTTTAA
14543 TATT TCATT TATT TATT TATT TATT TATT CT-TT TATTT TATTT TATT
1 TATT T-ATT TATT TATT TATT TATT TATT -TATT TA-TT TA-TT TATT
*
14590 T-TT TACT TATT T
1 TATT TATT TATT T
14602 TTATTCTTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 4 0.08
4 30 0.62
5 14 0.29
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:17667 original size:15 final size:15
Alignment explanation
Indices: 17642--17692 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
17632 CAAAAAGGGC
*
17642 AAAAAGAAAAAAGAA
1 AAAAACAAAAAAGAA
*
17657 AAGAAACAAAAAAGGA
1 AA-AAACAAAAAAGAA
*
17673 AAAAACAAAAGAACAA
1 AAAAACAAAA-AAGAA
17689 AAAA
1 AAAA
17693 GAAAGAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.33
16 20 0.67
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAACAAAAAAGAA
Found at i:17674 original size:24 final size:23
Alignment explanation
Indices: 17642--17704 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
17632 CAAAAAGGGC
*
17642 AAAAA-GAAAAAAGAAAAGAAACA
1 AAAAAGGAAAAAACAAAAG-AACA
17665 AAAAAGGAAAAAACAAAAGAACA
1 AAAAAGGAAAAAACAAAAGAACA
*
17688 AAAAA-GAAAGAACAAAA
1 AAAAAGGAAAAAACAAAA
17705 ATCGAAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 11 0.30
23 14 0.38
24 12 0.32
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (23 bp):
AAAAAGGAAAAAACAAAAGAACA
Found at i:17714 original size:15 final size:14
Alignment explanation
Indices: 17648--17705 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
17638 GGGCAAAAAG
17648 AAAAAAGAAAAGAAAC
1 AAAAAAG-AAAG-AAC
17664 AAAAAAG---GAA-
1 AAAAAAGAAAGAAC
*
17674 AAAACA-AAAGAAC
1 AAAAAAGAAAGAAC
17687 AAAAAAGAAAGAAC
1 AAAAAAGAAAGAAC
17701 AAAAA
1 AAAAA
17706 TCGAAAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
10 5 0.14
11 2 0.06
12 4 0.11
13 5 0.14
14 12 0.34
16 7 0.20
ACGTcount: A:0.81, C:0.07, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAGAAC
Found at i:18422 original size:22 final size:22
Alignment explanation
Indices: 18347--18423 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
18337 GCTACCCCAT
*
18347 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
18369 CAAACCTATGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
18391 CAAACATTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
18413 CAAACCTTTGA
1 CAAACCTTTGA
18424 CCAAACATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:19348 original size:106 final size:106
Alignment explanation
Indices: 19160--19494 Score: 571
Period size: 106 Copynumber: 3.2 Consensus size: 106
19150 TCGAGAGTAG
19160 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
19225 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* * * * *
19266 AGTTCAACTTCACAACGAAGAGACCGCTGGTTGTCAACAAACAACTTCTCAATTTTAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
19331 TTTAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
* *
19372 AGTTCAACTTCACGACGAAGGGATCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAAT
1 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
* *
19437 TTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCA
66 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
19478 AGTTCAACTTCACGACG
1 AGTTCAACTTCACGACG
19495 GAGGATATTG
Statistics
Matches: 211, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 211 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCA
Found at i:20294 original size:37 final size:37
Alignment explanation
Indices: 20241--20337 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
20231 CCTTTTCGTC
*
20241 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
20278 TTGCTAGGATTCAAACTCATAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* *
20315 CTACTATGATTTAAACTCCTAAA
1 CTACTAGGATTCAAACTCCTAAA
20338 GATATGATCC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:20850 original size:65 final size:66
Alignment explanation
Indices: 20781--20927 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 66
20771 TATACGTATG
*
20781 TTTTTTTTAAATGATTTTCAATT-G-ATTTTTTTACACTATATATTATTA-TTATATATACATAT
1 TTTTTTTTAAAT-ATTTTCAATTGGTATTTTTTAACACTATAT-TTATTATTTATATATACATAT
20843 ATA
64 ATA
* * * *
20846 TTTTTTATT---TATATTCATTTGGTTATTTTTTAATACTATATTTATTATTTATATATATATAT
1 TTTTTT-TTAAATATTTTCAATTGG-TATTTTTTAACACTATATTTATTATTTATATATACATAT
20908 ATA
64 ATA
*
20911 CTTTTTTTAAATATTTT
1 TTTTTTTTAAATATTTT
20928 ACTTATAAGC
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
62 8 0.12
63 2 0.03
64 8 0.12
65 42 0.63
66 2 0.03
67 5 0.07
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (66 bp):
TTTTTTTTAAATATTTTCAATTGGTATTTTTTAACACTATATTTATTATTTATATATACATATAT
A
Found at i:20896 original size:19 final size:19
Alignment explanation
Indices: 20817--20905 Score: 60
Period size: 19 Copynumber: 4.6 Consensus size: 19
20807 TTTTTTACAC
20817 TATATAT-TA-TTATTATAT
1 TATATATATATTTATTAT-T
* *
20835 ATACATATATATTTTTTATT
1 -TATATATATATTTATTATT
* *
20855 TATAT-TCATTTGGTTATTTTT
1 TATATAT-ATAT--TTATTATT
20876 TA-ATACTATATTTATTATT
1 TATATA-TATATTTATTATT
20895 TATATATATAT
1 TATATATATAT
20906 ATATACTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
18 1 0.02
19 27 0.50
20 8 0.15
21 17 0.31
22 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATATATTTATTATT
Found at i:21235 original size:4 final size:4
Alignment explanation
Indices: 21222--21262 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
21212 TTTTTTTTAA
*
21222 TATT TCATT TATT TATT TATT TATT TATT T-TT TACT TATT T
1 TATT T-ATT TATT TATT TATT TATT TATT TATT TATT TATT T
21263 TTATTCTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 26 0.79
5 4 0.12
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:21834 original size:16 final size:16
Alignment explanation
Indices: 21813--21848 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
21803 GAACTGATAG
21813 TGGTGGTATAGAAGGA
1 TGGTGGTATAGAAGGA
21829 TGGTGGTATAGAAGGA
1 TGGTGGTATAGAAGGA
21845 TGGT
1 TGGT
21849 TGGCAGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.44, T:0.28
Consensus pattern (16 bp):
TGGTGGTATAGAAGGA
Found at i:24319 original size:39 final size:39
Alignment explanation
Indices: 24223--24320 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 39
24213 TTCTAAGACT
* *
24223 TTACCGCAGACTCCTT-TGCTTTGTGCTCATGGTAAGTCC
1 TTACCGCAG-GTCCTTATGCTTTGTGCTCAAGGTAAGTCC
* *
24262 TTACCGCAAG-CTCATATGCTTTGTGCTCAAGGTAAGTCC
1 TTACCGCAGGTC-CTTATGCTTTGTGCTCAAGGTAAGTCC
24301 TTACCGCAGGTCCTTATGCT
1 TTACCGCAGGTCCTTATGCT
24321 ATATGTATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
37 1 0.02
38 2 0.04
39 46 0.92
40 1 0.02
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (39 bp):
TTACCGCAGGTCCTTATGCTTTGTGCTCAAGGTAAGTCC
Found at i:27005 original size:2 final size:2
Alignment explanation
Indices: 26995--27028 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
26985 TTTATTTTAT
*
26995 TA TA T- TA TA TA TT TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27029 TAATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:27097 original size:24 final size:23
Alignment explanation
Indices: 27049--27097 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
27039 TAACTTTGTC
*
27049 TTTATGGTACGTATTTCTCTGTT
1 TTTATGGTACGTATTTCTCTCTT
* *
27072 TTTATGGTACGTTTTTTCTTTCTT
1 TTTATGGTACG-TATTTCTCTCTT
27096 TT
1 TT
27098 AGCACATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.10, C:0.12, G:0.14, T:0.63
Consensus pattern (23 bp):
TTTATGGTACGTATTTCTCTCTT
Found at i:27568 original size:18 final size:20
Alignment explanation
Indices: 27545--27583 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
27535 TTATGTGAAA
27545 TCGGTTTTTT-GG-TTCGGT
1 TCGGTTTTTTCGGTTTCGGT
27563 TCGGTTTTTTCGGTTTCGGT
1 TCGGTTTTTTCGGTTTCGGT
27583 T
1 T
27584 TTTCAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 2 0.11
20 7 0.37
ACGTcount: A:0.00, C:0.13, G:0.31, T:0.56
Consensus pattern (20 bp):
TCGGTTTTTTCGGTTTCGGT
Found at i:27576 original size:14 final size:15
Alignment explanation
Indices: 27557--27586 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27547 GGTTTTTTGG
27557 TTCGG-TTCGGTTTT
1 TTCGGTTTCGGTTTT
27571 TTCGGTTTCGGTTTT
1 TTCGGTTTCGGTTTT
27586 T
1 T
27587 CAATGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.13, G:0.27, T:0.60
Consensus pattern (15 bp):
TTCGGTTTCGGTTTT
Found at i:28001 original size:11 final size:10
Alignment explanation
Indices: 27975--28006 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
27965 TTAATTCACT
27975 GGTTCAACCG
1 GGTTCAACCG
27985 GGTTCAACCG
1 GGTTCAACCG
27995 CGGTTCAACCG
1 -GGTTCAACCG
28006 G
1 G
28007 ATTTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (10 bp):
GGTTCAACCG
Found at i:28810 original size:30 final size:30
Alignment explanation
Indices: 28768--28831 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
28758 AGAACCGACA
*
28768 GTTCACACCGGTTTTGCCAGTTTTCAGCCG
1 GTTCACACCGGTTTTGCCAGTTCTCAGCCG
* *
28798 GTTCAC-CTCGGTTTTGTCGGTTCTCAGCCG
1 GTTCACAC-CGGTTTTGCCAGTTCTCAGCCG
28828 GTTC
1 GTTC
28832 TATCGGTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.09, C:0.30, G:0.25, T:0.36
Consensus pattern (30 bp):
GTTCACACCGGTTTTGCCAGTTCTCAGCCG
Found at i:28914 original size:5 final size:5
Alignment explanation
Indices: 28900--28928 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
28890 CACGGTTCAA
28900 CCGG- CCGGT CCGGT CCGGT CCGGT CCGGT
1 CCGGT CCGGT CCGGT CCGGT CCGGT CCGGT
28929 TTTAATAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.41, G:0.41, T:0.17
Consensus pattern (5 bp):
CCGGT
Found at i:33226 original size:22 final size:22
Alignment explanation
Indices: 33201--33251 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
33191 CACCACAGCT
*
33201 CGTATAAATGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
*
33223 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
33245 CGTAGAA
1 CGTAGAA
33252 TTATGTCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.18
Consensus pattern (22 bp):
CGTAGAAATGCACCGAAGTGCC
Found at i:33252 original size:22 final size:22
Alignment explanation
Indices: 33209--33253 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
33199 CTCGTATAAA
33209 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
33231 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
33253 T
1 T
33254 ATGTCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:33525 original size:29 final size:29
Alignment explanation
Indices: 33492--33561 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
33482 CCTATAGTTC
**
33492 TCATGTCATGTAATACATATAATATGAAT
1 TCATGTCATGTAATACATATAATACAAAT
*
33521 TCATGTCATGTAATACATTTAATACAAAT
1 TCATGTCATGTAATACATATAATACAAAT
33550 TCATGTCATGTA
1 TCATGTCATGTA
33562 TCATAATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (29 bp):
TCATGTCATGTAATACATATAATACAAAT
Found at i:34012 original size:67 final size:68
Alignment explanation
Indices: 33864--34015 Score: 227
Period size: 68 Copynumber: 2.2 Consensus size: 68
33854 TTTTTCTCAT
* * *
33864 GGGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACGA
1 GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA
33929 TGA
66 TGA
* * *
33932 GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTC-A
1 GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA
33995 TTGA
66 -TGA
33999 GGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
34016 TTGAATGGGT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
66 1 0.01
67 22 0.29
68 54 0.70
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.27
Consensus pattern (68 bp):
GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGA
TGA
Found at i:40120 original size:22 final size:22
Alignment explanation
Indices: 40077--40121 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
40067 CTCGTATAAA
*
40077 TGCACCGAAGTGCCCATTGAAT
1 TGCACCGAAGTGCCCATAGAAT
*
40099 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCATAGAAT
40121 T
1 T
40122 ATGTCCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (22 bp):
TGCACCGAAGTGCCCATAGAAT
Found at i:40382 original size:30 final size:31
Alignment explanation
Indices: 40341--40398 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
40331 TAGCCATAGT
*
40341 ATTTTCATACCTTTAACACATAG-GCATCTC
1 ATTTACATACCTTTAACACATAGTGCATCTC
*
40371 ATTTACATACCTTTATCACATAGTGCAT
1 ATTTACATACCTTTAACACATAGTGCAT
40399 ATAACTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (31 bp):
ATTTACATACCTTTAACACATAGTGCATCTC
Found at i:40457 original size:29 final size:29
Alignment explanation
Indices: 40415--40486 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
40405 TTTTCTGCAT
**
40415 ATTCATGTCATGTAATACATATAATATGA
1 ATTCATGTCATGTAATACATATAATACAA
*
40444 ATTCATGTCATGTAATACATTTAATACAA
1 ATTCATGTCATGTAATACATATAATACAA
40473 ATTCATGTCATGTA
1 ATTCATGTCATGTA
40487 TCATAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (29 bp):
ATTCATGTCATGTAATACATATAATACAA
Found at i:40908 original size:67 final size:67
Alignment explanation
Indices: 40789--40941 Score: 193
Period size: 67 Copynumber: 2.3 Consensus size: 67
40779 TTTTTCTCAT
* * *
40789 GGGGGAATCGGTTCCCCCCCCCTGGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATAC
1 GGGGGTATCGGTT--CCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCAT-TAC
40854 GA-TGA
63 -ATTGA
* * *
40859 GGGGGTATCGGTTCCCCCCCT-GGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCATTTCATT
1 GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATTACATT
40923 GA
66 GA
*
40925 GAGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
40942 TTGAATGGGT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
65 1 0.01
66 21 0.28
67 33 0.44
68 8 0.11
70 12 0.16
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (67 bp):
GGGGGTATCGGTTCCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATTACATT
GA
Found at i:46007 original size:53 final size:53
Alignment explanation
Indices: 45926--46034 Score: 173
Period size: 53 Copynumber: 2.1 Consensus size: 53
45916 AATAAACAAA
* *
45926 TAAAAACAAACTGAACATAAATACTTTTGATATTGAGCAAACCAACATGAATT
1 TAAAAACAAACTGAACATAAATACTTTTGAAATTGAACAAACCAACATGAATT
* * *
45979 TAAACACAAACTGAACATGAATACTTTTGAAATTGAACAAACCAATATGAATT
1 TAAAAACAAACTGAACATAAATACTTTTGAAATTGAACAAACCAACATGAATT
46032 TAA
1 TAA
46035 CCTTATTTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.27
Consensus pattern (53 bp):
TAAAAACAAACTGAACATAAATACTTTTGAAATTGAACAAACCAACATGAATT
Found at i:46050 original size:30 final size:30
Alignment explanation
Indices: 46016--46098 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 30
46006 TGAAATTGAA
46016 CAAACCAATATGAATTTA-A-CCTTATTTGTT
1 CAAACCAAT-TG-ATTTACACCCTTATTTGTT
46046 CAAACCCAATTGATTTACACCCTTATTTGTT
1 CAAA-CCAATTGATTTACACCCTTATTTGTT
**
46077 CAAACCTCGTTGATTTACACCC
1 CAAACC-AATTGATTTACACCC
46099 GTAATACTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
29 5 0.11
30 9 0.19
31 33 0.70
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (30 bp):
CAAACCAATTGATTTACACCCTTATTTGTT
Found at i:46070 original size:31 final size:31
Alignment explanation
Indices: 46035--46098 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
46025 ATGAATTTAA
46035 CCTTATTTGTTCAAACC-CAATTGATTTACAC
1 CCTTATTTGTTCAAACCTC-ATTGATTTACAC
*
46066 CCTTATTTGTTCAAACCTCGTTGATTTACAC
1 CCTTATTTGTTCAAACCTCATTGATTTACAC
46097 CC
1 CC
46099 GTAATACTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (31 bp):
CCTTATTTGTTCAAACCTCATTGATTTACAC
Found at i:48130 original size:6 final size:6
Alignment explanation
Indices: 48121--48155 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
48111 GGACGTGTCG
48121 ACGACC ACGACC ACGACC ACGACC ACGACC -CGACC
1 ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC
48156 CGAGACGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.31, C:0.51, G:0.17, T:0.00
Consensus pattern (6 bp):
ACGACC
Found at i:48764 original size:6 final size:6
Alignment explanation
Indices: 48753--48840 Score: 176
Period size: 6 Copynumber: 14.7 Consensus size: 6
48743 GCGATTTTGT
48753 TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG
1 TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG
48801 TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGT
1 TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGTCG TGGT
48841 AATACGTGTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 82 1.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.34
Consensus pattern (6 bp):
TGGTCG
Found at i:49013 original size:21 final size:21
Alignment explanation
Indices: 48951--49013 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
48941 CGTAGACTAT
*
48951 CTATCGCAACGCGAAATGGAA
1 CTATCGCAACGCGAAATGCAA
* * * ** *
48972 -AACCACAACGCGATTTTCAA
1 CTATCGCAACGCGAAATGCAA
48992 CTATCGCAACGCGAAATGCAA
1 CTATCGCAACGCGAAATGCAA
49013 C
1 C
49014 GCGAATTTGC
Statistics
Matches: 28, Mismatches: 13, Indels: 2
0.65 0.30 0.05
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.38, C:0.29, G:0.17, T:0.16
Consensus pattern (21 bp):
CTATCGCAACGCGAAATGCAA
Found at i:49077 original size:20 final size:20
Alignment explanation
Indices: 49054--49105 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
49044 GATTTCAACT
49054 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
49074 ATCGCGCAACGCGAAATGGAAA
1 AT--CGCAACGCGAAATGGAAA
*
49096 AACGCAACGC
1 ATCGCAACGC
49106 AATTTTCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 10 0.34
22 19 0.66
ACGTcount: A:0.42, C:0.25, G:0.25, T:0.08
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:53374 original size:3 final size:3
Alignment explanation
Indices: 53366--53411 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
53356 TTTTTTATCC
53366 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
53412 AATTTATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:53960 original size:16 final size:15
Alignment explanation
Indices: 53937--53977 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
53927 ACAGAACCGG
53937 AAAAAAAAACAGAGA
1 AAAAAAAAACAGAGA
*
53952 AAGAAAAAA-AGAGA
1 AAAAAAAAACAGAGA
53966 AAAAAAACAACA
1 AAAAAAA-AACA
53978 ACAACAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 11 0.50
15 10 0.45
16 1 0.05
ACGTcount: A:0.80, C:0.07, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAAACAGAGA
Found at i:57095 original size:15 final size:14
Alignment explanation
Indices: 57070--57111 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
57060 TTTTCATGCA
57070 TACAT-TTGCATTT
1 TACATCTTGCATTT
57083 TACATCCTTGCATTT
1 TACAT-CTTGCATTT
* *
57098 TTCATTTTGCATTT
1 TACATCTTGCATTT
57112 ATACTGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.20
14 8 0.32
15 12 0.48
ACGTcount: A:0.19, C:0.19, G:0.07, T:0.55
Consensus pattern (14 bp):
TACATCTTGCATTT
Found at i:57190 original size:17 final size:17
Alignment explanation
Indices: 57155--57191 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
57145 TACATTCATA
57155 TTTTTATATTTGCATTT
1 TTTTTATATTTGCATTT
57172 TTTTTCATATTTGCATTT
1 TTTTT-ATATTTGCATTT
57190 TT
1 TT
57192 ACGTTCGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.16, C:0.08, G:0.05, T:0.70
Consensus pattern (17 bp):
TTTTTATATTTGCATTT
Found at i:63043 original size:114 final size:113
Alignment explanation
Indices: 62842--63151 Score: 476
Period size: 114 Copynumber: 2.7 Consensus size: 113
62832 CCATATGCTC
62842 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACTCCAAAACCAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAC-CCAAAACCAAT
* * *
62907 CATTAGATTTGAAAGATGAATTTGCTCATATTAGAAATAAGAAGACCCA
65 CATTGGATTTGAAAGATAAATTTGCTCATAGTAGAAATAAGAAGACCCA
* *
62956 ATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAATCCCAAAACTAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAA-CCCAAAACCAAT
*
63021 CATTGGATTTGAAAGATAAATTTGCTCATAGTAGAAATAAGGAGACCCA
65 CATTGGATTTGAAAGATAAATTTGCTCATAGTAGAAATAAGAAGACCCA
* * * * * *
63070 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGATTCGGTAGGAACCCCAGAACCGAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAA-CCCAAAACCAAT
*
63135 CATTGGAATTGAAAGAT
65 CATTGGATTTGAAAGAT
63152 GAACTGCATG
Statistics
Matches: 179, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
114 178 0.99
115 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (113 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCAAAACCAATC
ATTGGATTTGAAAGATAAATTTGCTCATAGTAGAAATAAGAAGACCCA
Found at i:65706 original size:22 final size:22
Alignment explanation
Indices: 65675--65732 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
65665 TACATCTACA
*
65675 CTTTTCAAAGATGATAGATTCC
1 CTTTTCAAAGATGACAGATTCC
* *
65697 CTTTTTAAAGATGACAGATTCT
1 CTTTTCAAAGATGACAGATTCC
65719 CTTTTCAAAGATGA
1 CTTTTCAAAGATGA
65733 AAGCTTTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (22 bp):
CTTTTCAAAGATGACAGATTCC
Found at i:66344 original size:112 final size:113
Alignment explanation
Indices: 66151--66829 Score: 904
Period size: 113 Copynumber: 5.9 Consensus size: 113
66141 TCATTCAATA
* *
66151 GATCAACA-TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
*
66215 TAATGAGAAGAATTTGTTCAACCTTTTACATGAATTCATCAATTGATG
66 TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTCATCAATTGATG
* *
66263 GATCAGCATTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAAAAGAAGTTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * * * *
66327 TAATAAGAATAACTTGTTCAACTTTTTGCAT-AATTCTATCACAGAAGGAGATAGATTAG
66 TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTC-AT--C------A-ATTGA-T-G
* * *
66386 CATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * *
66451 TAATGAGAAGAATTTGTTCAACCTTTTACATGAATCCATCATTTGATG
66 TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTCATCAATTGATG
*
66499 GATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * *
66564 TAATGAGAAGAACTTGTTCAACCTTTTGC-TCAAATCCATC-ATTCGATG
66 TAATGAGAAGAACTTGTTCAACCTTTTACAT-GAATTCATCAATT-GATG
* *
66612 GATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
*
66677 TAATGAGAAGAATTTGTTCAACCTTTTACATGAATTCATCAATTGATG
66 TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTCATCAATTGATG
* * * *
66725 GACCAGCATTCCCAGAG-AAGTTCATAATGAGAAGAATTCATCTGAAGAAGAAAGAAGAAGTTCA
1 GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * *
66789 TAATAAGAAGAACTTGTTCAACTTTTTGCAT-AATTCTATCA
66 TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTC-ATCA
66830 CAGAAGGAGA
Statistics
Matches: 502, Mismatches: 45, Indels: 40
0.86 0.08 0.07
Matches are distributed among these distances:
111 10 0.02
112 157 0.31
113 226 0.45
114 6 0.01
115 3 0.01
116 1 0.00
120 1 0.00
121 4 0.01
122 2 0.00
123 15 0.03
124 73 0.15
125 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (113 bp):
GATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTTTACATGAATTCATCAATTGATG
Found at i:67711 original size:13 final size:13
Alignment explanation
Indices: 67686--67718 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
67676 AGAACCGGAA
67686 AAAAAAAACAGAG
1 AAAAAAAACAGAG
67699 AAAGAAAAA-AGAG
1 AAA-AAAAACAGAG
67712 AAAAAAA
1 AAAAAAA
67719 CAACAACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 10 0.53
14 5 0.26
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAACAGAG
Found at i:72572 original size:36 final size:36
Alignment explanation
Indices: 72498--72572 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
72488 TTTTTATATT
*
72498 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
*
72534 TTTAATTTT-TAAATAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
72570 TTT
1 TTT
72573 GTAATATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 17 0.49
36 18 0.51
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:77059 original size:22 final size:22
Alignment explanation
Indices: 77033--77076 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77023 TAATCTAATC
*
77033 GAACTCGAGCTAATTGGAACTA
1 GAACTCGAGCCAATTGGAACTA
77055 GAACTCGAGCCAATTGGAACTA
1 GAACTCGAGCCAATTGGAACTA
77077 CTCAACTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
GAACTCGAGCCAATTGGAACTA
Found at i:77170 original size:21 final size:21
Alignment explanation
Indices: 77146--77186 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
77136 CATGTCTTTT
77146 TATTTTA-TTTTATAAATTTAA
1 TATTTTATTTTTA-AAATTTAA
77167 TATTTTATTTTTAAAATTTA
1 TATTTTATTTTTAAAATTTA
77187 GAGTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTTTATTTTTAAAATTTAA
Found at i:89457 original size:6 final size:6
Alignment explanation
Indices: 89446--89474 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
89436 TTATTTTCTC
89446 AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
89475 CTAAACCGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:89690 original size:16 final size:17
Alignment explanation
Indices: 89671--89710 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
89661 AAAATATTAG
*
89671 TAATAATTAA-TATGAT
1 TAATAATTAACAATGAT
89687 TAATAATTAACAATGAT
1 TAATAATTAACAATGAT
*
89704 AAATAAT
1 TAATAAT
89711 ACTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (17 bp):
TAATAATTAACAATGAT
Found at i:91824 original size:20 final size:21
Alignment explanation
Indices: 91779--91824 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
91769 ATTTTTGCAG
*
91779 AGAAAACATCCCCAAAAGGCT
1 AGAAAACATCCCCAAAAGGAT
* *
91800 AGAAATCATCCCC-AACGGAT
1 AGAAAACATCCCCAAAAGGAT
91820 AGAAA
1 AGAAA
91825 CGATCATAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.48, C:0.26, G:0.15, T:0.11
Consensus pattern (21 bp):
AGAAAACATCCCCAAAAGGAT
Found at i:92804 original size:23 final size:23
Alignment explanation
Indices: 92778--92822 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
92768 CACCACAGCT
*
92778 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
92801 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
92823 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:92989 original size:150 final size:149
Alignment explanation
Indices: 92790--93105 Score: 562
Period size: 150 Copynumber: 2.1 Consensus size: 149
92780 TATAAATGCA
*
92790 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATATAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAA
*
92854 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCCAAGACTTCACACATGT
65 TTCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTT-CAAGACTTCACACATGT
* *
92919 TCCACAGAATATATATATATC
129 TCCAAAGAATATACATATATC
92940 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
93005 TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
*
93070 CAAAGAATATACATATGTC
131 CAAAGAATATACATATATC
93089 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
93106 CCCTCTACCC
Statistics
Matches: 160, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
149 53 0.33
150 107 0.67
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
CAAAGAATATACATATATC
Found at i:99754 original size:23 final size:23
Alignment explanation
Indices: 99728--99772 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
99718 CACCACAGCT
*
99728 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
99751 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
99773 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:99941 original size:150 final size:149
Alignment explanation
Indices: 99740--100055 Score: 553
Period size: 150 Copynumber: 2.1 Consensus size: 149
99730 TATAAATGCA
*
99740 CCGAAGTG-CCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATATAA
1 CCGAAG-GACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAA
*
99804 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTTCCAAGACTTCACACATGT
65 TTCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTT-CAAGACTTCACACATGT
* *
99869 TCCACAGAATATATATATATC
129 TCCAAAGAATATACATATATC
*
99890 CCGAAGGACTGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
1 CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
99955 TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
*
100020 CAAAGAATATACATATGTC
131 CAAAGAATATACATATATC
100039 CCGAAGGACCGCGTAGA
1 CCGAAGGACCGCGTAGA
100056 CCCTCTACCC
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
149 52 0.33
150 106 0.67
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (149 bp):
CCGAAGGACCGCGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAAT
TCCTTAAGAATCATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTC
CAAAGAATATACATATATC
Found at i:103741 original size:18 final size:18
Alignment explanation
Indices: 103715--103749 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103705 AAAGTCCATT
* *
103715 AAAAGTGAATTTGAACAC
1 AAAACTGAATTTCAACAC
103733 AAAACTGAATTTCAACA
1 AAAACTGAATTTCAACA
103750 TACGTAGTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.23
Consensus pattern (18 bp):
AAAACTGAATTTCAACAC
Found at i:110564 original size:10 final size:10
Alignment explanation
Indices: 110549--110589 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
110539 TTCATCACAC
110549 CAAATTCTCT
1 CAAATTCTCT
*
110559 CAAATTTTCT
1 CAAATTCTCT
*
110569 CAATTTCTCT
1 CAAATTCTCT
*
110579 CAAATACTCT
1 CAAATTCTCT
110589 C
1 C
110590 TCTGTTTAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:110669 original size:18 final size:19
Alignment explanation
Indices: 110631--110669 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
110621 ATATTATGTA
110631 TTTAATTTATTTAAGTATT
1 TTTAATTTATTTAAGTATT
*
110650 TTTACTTTATTTAA-TATT
1 TTTAATTTATTTAAGTATT
110668 TT
1 TT
110670 ACTAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTAATTTATTTAAGTATT
Found at i:121000 original size:26 final size:24
Alignment explanation
Indices: 120929--121000 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
120919 TTATATTTGT
120929 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
120954 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
120976 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
121001 GTTGGACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:121077 original size:31 final size:29
Alignment explanation
Indices: 121040--121098 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
121030 ATTTTGTTTA
121040 TTATCATTTAATATCAGTTATTGTAA-TTTGG
1 TTATCATTTAATA-C--TTATTGTAAGTTTGG
121071 TTATCATTTAATACTTATTGTAAGTTTG
1 TTATCATTTAATACTTATTGTAAGTTTG
121099 TTGTATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 9 0.33
29 4 0.15
30 1 0.04
31 13 0.48
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.53
Consensus pattern (29 bp):
TTATCATTTAATACTTATTGTAAGTTTGG
Found at i:123935 original size:32 final size:31
Alignment explanation
Indices: 123818--123952 Score: 94
Period size: 33 Copynumber: 4.2 Consensus size: 31
123808 TACTGTGACT
* *
123818 AAATAATTTTGGT-ACAATTTGTTATTGTGAA
1 AAATAAATTT-GTCACAATTTGTTATTTTGAA
* * **
123849 AGAATATTATTTGTCACAATTTTTTATAATGAGA
1 A-AATA-AATTTGTCACAATTTGTTATTTTGA-A
* * * *
123883 AATTAATATTTGTTAGAATTTGTTATTTTGATT
1 AAATAA-ATTTGTCACAATTTGTTATTTTGA-A
123916 AAATAAATTTGTCACAATTT-TTCATTTTGATA
1 AAATAAATTTGTCACAATTTGTT-ATTTTGA-A
123948 AAATA
1 AAATA
123953 TTGGGAAGAA
Statistics
Matches: 80, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
31 3 0.04
32 31 0.39
33 44 0.55
34 2 0.03
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.47
Consensus pattern (31 bp):
AAATAAATTTGTCACAATTTGTTATTTTGAA
Found at i:124151 original size:32 final size:32
Alignment explanation
Indices: 124089--124148 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
124079 AGAAATTAAT
*
124089 ATTTGTTATAAATTATTATTTTGACTAAATAA
1 ATTTGTTACAAATTATTATTTTGACTAAATAA
* *
124121 ATTTGTTACAATTTTTTATTTTGA-TAAA
1 ATTTGTTACAAATTATTATTTTGACTAAA
124149 ATATTGTGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 4 0.16
32 21 0.84
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
ATTTGTTACAAATTATTATTTTGACTAAATAA
Found at i:125580 original size:2 final size:2
Alignment explanation
Indices: 125573--125607 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
125563 ATTTACTAAT
*
125573 TA TA TA TA TA TA TA TA TA TA TA T- TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125608 ATGCATATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:126636 original size:38 final size:38
Alignment explanation
Indices: 126584--126667 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
126574 CAAAATAGTT
* * * * *
126584 ATAATTATTTAAATTCTTTACTTTATTAATTTTTTTAC
1 ATAATTATTCAAATTATTTACTTGATTAAATTATTTAC
126622 ATAATTATTCAAATTATTTACTTGATTAAATTATTTAC
1 ATAATTATTCAAATTATTTACTTGATTAAATTATTTAC
126660 ATAATTAT
1 ATAATTAT
126668 AATTAAGAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (38 bp):
ATAATTATTCAAATTATTTACTTGATTAAATTATTTAC
Found at i:126666 original size:17 final size:17
Alignment explanation
Indices: 126632--126672 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
126622 ATAATTATTC
* *
126632 AAATTATTTACTTGATT
1 AAATTATTTACATAATT
126649 AAATTATTTACATAATT
1 AAATTATTTACATAATT
126666 ATAATTA
1 A-AATTA
126673 AGAGAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (17 bp):
AAATTATTTACATAATT
Found at i:126762 original size:2 final size:2
Alignment explanation
Indices: 126755--126783 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
126745 GCCATTGAAT
126755 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126784 CACATAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:128312 original size:15 final size:15
Alignment explanation
Indices: 128292--128326 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
128282 CAAAAAAAAT
128292 ATTAATAGTGACAAA
1 ATTAATAGTGACAAA
**
128307 ATTAATTTTGACAAA
1 ATTAATAGTGACAAA
128322 ATTAA
1 ATTAA
128327 ATTTGTCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (15 bp):
ATTAATAGTGACAAA
Found at i:128340 original size:15 final size:15
Alignment explanation
Indices: 128300--128331 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
128290 ATATTAATAG
*
128300 TGACAAAATTAATTT
1 TGACAAAATTAAATT
128315 TGACAAAATTAAATT
1 TGACAAAATTAAATT
128330 TG
1 TG
128332 TCACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (15 bp):
TGACAAAATTAAATT
Found at i:138706 original size:14 final size:16
Alignment explanation
Indices: 138686--138730 Score: 67
Period size: 14 Copynumber: 2.9 Consensus size: 16
138676 TAACAGACTT
138686 GTCTGTTTTCTACA-A
1 GTCTGTTTTCTACACA
138701 -TCTGTTTTCTACACA
1 GTCTGTTTTCTACACA
*
138716 GTTTGTTTTCTACAC
1 GTCTGTTTTCTACAC
138731 TAAGTCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 13 0.48
15 1 0.04
16 13 0.48
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.49
Consensus pattern (16 bp):
GTCTGTTTTCTACACA
Found at i:141935 original size:16 final size:17
Alignment explanation
Indices: 141914--141946 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
141904 AAGAAGTTGT
*
141914 CACCAAC-CTTCAATTC
1 CACCAACGCATCAATTC
141930 CACCAACGCATCAATTC
1 CACCAACGCATCAATTC
141947 TCGAATCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.42, G:0.03, T:0.21
Consensus pattern (17 bp):
CACCAACGCATCAATTC
Found at i:147350 original size:33 final size:33
Alignment explanation
Indices: 147313--147409 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 33
147303 TATGAAATGA
* *
147313 CATATTATGATCAATATAGTAAGGATTATGCTG
1 CATATTATGATCAATATATTAAGGAATATGCTG
* *
147346 CATATTATGGTCAATATATTAAGGAATACGCTG
1 CATATTATGATCAATATATTAAGGAATATGCTG
*
147379 CATATCATGATCAATATATTAAGGAATATGC
1 CATATTATGATCAATATATTAAGGAATATGC
147410 CGCTGCTGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (33 bp):
CATATTATGATCAATATATTAAGGAATATGCTG
Done.