genome.fa.s6326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006326.1 Hibiscus syriacus cultivar Beakdansim tig00015121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111479

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437--1499	23	2.8	22	78	7	72	28	22	26	22	1.99
1519--1723	102	2.0	98	89	6	313	37	24	12	25	1.90
8078--8113	18	2.0	18	94	0	63	55	22	2	19	1.56
8525--8574	25	2.0	25	96	0	91	26	8	22	44	1.80
8953--9005	24	2.2	24	86	0	70	35	1	13	49	1.53
9266--9352	39	2.2	39	95	0	156	47	21	13	17	1.82
9558--9613	20	2.8	20	88	0	85	16	17	25	41	1.89
9672--9813	62	2.2	63	85	7	180	50	16	1	30	1.54
11190--11262	21	3.5	21	72	7	67	20	19	34	26	1.96
11167--11260	42	2.2	42	84	3	118	19	20	36	24	1.95
11190--11289	42	2.4	42	80	6	112	23	18	34	25	1.96
13503--13527	13	1.9	13	100	0	50	80	8	8	4	1.03
13746--13796	22	2.3	22	93	0	84	23	13	41	21	1.89
13924--13968	20	2.2	20	96	0	81	17	17	24	40	1.91
13960--14013	21	2.6	21	96	0	99	29	14	29	25	1.95
14034--14087	20	2.7	20	72	11	65	25	12	31	29	1.93
18680--18795	30	4.1	30	75	15	86	65	8	12	12	1.47
18884--18955	30	2.4	30	79	2	83	50	8	22	19	1.74
21021--21401	149	2.6	149	88	0	557	36	17	13	33	1.88
22474--22801	84	3.9	84	90	2	489	32	23	24	18	1.97
22474--22801	42	7.8	41	87	6	424	32	23	24	18	1.97
23741--23891	29	5.4	28	76	11	139	42	20	5	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23741--23891	55	2.7	57	82	5	182	42	20	5	31	1.74
23751--23915	84	2.0	84	83	4	208	43	18	5	32	1.73
23921--23950	13	2.3	13	100	0	60	13	23	46	16	1.82
30064--30355	42	7.0	41	87	4	413	31	23	24	20	1.98
30064--30355	84	3.5	84	92	0	478	31	23	24	20	1.98
31281--31438	29	5.4	29	76	10	151	43	20	6	29	1.76
42198--42415	110	2.0	110	86	0	301	29	19	17	33	1.95
42335--42570	54	4.3	54	73	6	197	27	18	19	34	1.95
42446--42550	55	1.9	55	84	0	138	27	20	16	35	1.94
44590--44640	6	8.3	6	78	4	57	41	43	0	15	1.47
44580--44640	31	1.9	32	87	9	90	39	42	0	18	1.50
45251--45295	21	2.1	21	91	0	72	48	28	6	15	1.70
50438--50537	42	2.4	42	93	1	164	19	13	40	28	1.88
50897--51048	43	3.6	43	85	0	198	26	9	32	30	1.89
55821--55847	2	13.5	2	100	0	54	48	0	0	51	1.00
57996--58039	3	14.3	3	90	4	70	63	0	34	2	1.07
60072--60099	2	14.0	2	100	0	56	50	0	0	50	1.00
62299--62383	30	2.8	30	94	0	143	34	15	18	31	1.92
79796--79862	35	1.9	35	93	6	118	49	11	0	38	1.40
79798--79874	35	2.2	35	86	6	102	49	10	2	37	1.51
85886--85930	21	2.1	21	83	0	54	24	24	15	35	1.94
85920--86032	20	5.7	20	98	0	217	38	21	20	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86229--86294	22	3.0	22	86	0	87	25	36	12	25	1.91
86629--86736	40	2.7	39	81	4	135	16	18	24	40	1.90
86629--86736	20	5.4	20	89	1	119	16	18	24	40	1.90
86703--86746	20	2.2	20	91	0	70	11	13	20	54	1.69
88607--88763	20	8.5	20	74	18	126	42	22	17	17	1.90
88630--88784	34	4.4	34	73	13	134	43	21	18	15	1.87
88808--88876	20	3.5	20	91	0	111	18	20	24	36	1.95
88808--88886	20	4.0	20	83	3	70	18	18	22	39	1.93
89326--89423	21	4.7	21	75	3	90	23	35	18	22	1.95
89351--89433	42	2.0	42	85	4	114	24	38	16	20	1.93
90813--90848	14	2.6	14	90	0	54	30	0	22	47	1.52
90954--91049	33	2.9	34	87	3	140	42	18	25	13	1.87
91064--91148	33	2.5	33	86	1	125	15	23	16	44	1.85
91131--91198	20	3.7	20	67	28	69	16	20	26	36	1.93
93584--93637	24	2.2	24	93	0	90	40	20	18	20	1.91
94479--94525	20	2.3	20	100	0	94	23	19	25	31	1.98
94519--94584	20	3.3	20	89	0	96	22	18	19	39	1.92
94581--94626	21	2.2	21	88	0	65	41	17	23	17	1.90
99778--99872	2	47.5	2	95	0	172	48	0	2	49	1.13
102475--102520	23	2.0	23	95	0	83	58	10	21	8	1.58
103997--104047	16	2.9	17	77	14	50	56	0	0	43	0.99
103996--104051	14	4.1	15	73	17	59	55	0	0	44	0.99

Tables:   1

The End!