genome.fa.s6327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006327.1 Hibiscus syriacus cultivar Beakdansim tig00015124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84560

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3659--3737	22	3.6	22	85	0	113	32	16	12	37	1.86
4411--4936	45	11.7	45	90	5	730	24	23	20	32	1.98
4412--4936	222	2.3	220	87	7	727	24	23	20	32	1.98
5186--5262	20	4.0	20	86	6	115	37	0	0	62	0.96
5207--5283	20	4.0	20	75	10	61	41	2	0	55	1.13
5186--5262	3	27.0	3	83	10	99	37	0	0	62	0.96
5320--5380	21	3.0	21	87	2	97	29	36	26	8	1.85
5412--5511	23	4.3	23	93	0	173	14	52	12	22	1.74
5908--5959	22	2.6	19	77	16	59	30	17	32	19	1.95
8556--8581	7	3.7	7	100	0	52	88	0	0	11	0.52
9065--9094	15	2.0	15	93	0	51	26	10	20	43	1.83
9287--9351	29	2.2	29	97	0	121	47	7	13	30	1.71
10443--10479	19	1.9	19	94	0	65	32	29	16	21	1.95
10707--10748	22	1.9	22	95	0	75	23	38	16	21	1.93
11552--11638	20	4.4	20	89	1	140	26	19	27	26	1.99
11654--11700	21	2.2	21	80	0	58	34	19	21	25	1.96
11566--11721	39	3.9	41	74	7	122	30	19	22	27	1.98
20481--20548	20	3.2	21	67	29	63	22	45	0	32	1.52
20482--20566	42	2.0	42	95	0	152	27	40	0	32	1.57
20820--20885	16	4.1	17	74	14	59	53	22	1	22	1.55
21141--21179	18	2.2	18	85	0	51	7	25	30	35	1.84
22749--22851	22	4.7	22	80	7	93	19	24	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26661--26700	21	1.9	21	90	10	64	32	10	5	52	1.56
29006--29037	2	16.0	2	100	0	64	50	0	0	50	1.00
32018--32139	59	2.1	59	84	6	158	34	18	16	31	1.93
33041--33080	18	2.3	17	86	4	53	35	0	0	65	0.93
37631--37666	2	18.0	2	94	0	63	47	0	2	50	1.15
38609--38669	29	2.1	29	96	0	113	32	6	16	44	1.73
39883--39944	28	2.3	27	86	8	81	29	1	11	58	1.42
53813--53880	32	2.1	32	91	0	109	38	14	13	33	1.85
59404--59464	23	2.7	23	97	0	113	40	16	18	24	1.90
59929--59971	22	2.0	22	86	13	63	53	6	4	34	1.49
61414--61491	10	7.1	10	70	18	57	8	11	17	61	1.55
62873--62945	28	2.6	28	80	8	85	28	6	5	58	1.46
63069--63144	22	3.0	27	69	23	74	13	5	6	75	1.18
63071--63226	23	6.6	24	67	21	66	12	8	3	75	1.17
63071--63152	23	3.4	23	70	18	69	10	7	6	75	1.18
63136--63196	32	1.9	31	83	9	79	13	9	1	75	1.12
63128--63206	31	2.6	30	79	15	74	11	10	2	75	1.13
63227--63338	44	2.8	40	83	14	133	19	6	3	70	1.24
64375--64409	18	1.9	18	88	0	52	25	31	22	20	1.98
70928--70962	18	1.9	18	100	0	70	25	34	22	17	1.96
71537--71581	19	2.4	19	100	0	90	28	26	17	26	1.98
73082--73131	22	2.3	22	96	0	91	30	0	38	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75331--75471	64	2.2	63	81	7	160	31	16	24	27	1.96
76337--76415	36	2.2	36	88	0	122	18	16	31	32	1.94
76336--76415	18	4.4	18	83	0	106	18	16	32	32	1.93
79825--79902	20	3.7	20	89	6	111	30	19	23	26	1.98
80704--80805	18	5.7	18	92	2	161	20	23	28	27	1.99
82676--82714	2	20.0	2	94	5	71	48	0	0	51	1.00

Tables:   1

The End!