Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006328.1 Hibiscus syriacus cultivar Beakdansim tig00015125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139913

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4384--4435
24
2.2
24
86
6
70
57
19
11
11
1.63
31172--31197
8
3.2
8
100
0
52
15
0
0
84
0.62
32737--32833
44
2.1
48
86
7
139
28
11
20
39
1.87
42478--42543
18
4.1
16
77
22
59
71
1
21
6
1.16
42529--42570
19
2.3
19
87
4
59
71
0
23
4
1.05
42563--42621
13
4.4
14
77
14
61
76
0
15
8
1.01
42571--42616
16
3.2
14
87
9
58
76
0
17
6
1.00
43913--44369
51
8.9
51
93
0
734
29
15
27
27
1.96
43923--44476
51
10.6
56
89
3
288
29
15
25
28
1.96
44229--44478
55
4.6
55
81
9
230
29
16
24
29
1.96
61026--62286
216
5.9
217
77
8
1208
26
26
16
31
1.96
61291--61911
198
3.0
198
86
9
900
26
26
15
31
1.96
61071--62204
417
2.7
418
86
6
1525
25
26
16
31
1.96
61489--62204
219
3.3
218
89
1
1055
25
27
16
31
1.97
61489--62286
219
3.7
214
86
3
956
26
25
17
30
1.97
66683--66708
13
2.0
13
100
0
52
15
53
15
15
1.73
68068--68144
37
2.1
37
82
4
93
46
1
3
48
1.28
83824--83848
2
12.5
2
100
0
50
48
0
0
52
1.00
84292--84342
27
2.0
26
88
7
77
33
17
0
49
1.47
85854--85880
6
4.5
6
100
0
54
37
33
14
14
1.88
96596--96651
20
2.8
20
97
0
103
10
23
21
44
1.83
96746--96838
6
15.5
6
100
0
186
33
50
16
0
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96839--96879
5
8.4
5
97
2
75
36
21
41
0
1.54
97356--97483
6
21.2
6
97
0
220
3
14
50
32
1.58
100835--100872
19
2.0
20
89
5
60
57
0
0
42
0.98
104939--105001
11
5.9
11
73
14
60
58
0
1
39
1.07
104972--105011
21
1.9
21
85
10
55
57
2
0
40
1.12
105877--106635
258
2.9
260
92
3
1277
17
19
14
49
1.80
107575--107631
17
3.4
17
90
0
87
22
15
29
31
1.95
107649--107679
16
1.9
16
93
0
53
12
12
25
48
1.77
108976--109013
18
2.1
18
90
0
58
57
15
10
15
1.64
117400--117547
76
2.0
75
90
4
235
29
2
10
58
1.45
118210--118250
21
1.9
22
90
5
66
19
4
0
75
0.98
128445--128476
6
5.3
6
100
0
64
31
0
50
18
1.48
131355--131382
3
9.3
3
100
0
56
32
0
0
67
0.91
136673--136714
9
5.1
8
80
13
50
59
0
2
38
1.10
137767--137838
30
2.3
30
88
7
108
50
0
0
50
1.00

Tables:   1

The End!