genome.fa.s633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000633.1 Hibiscus syriacus cultivar Beakdansim tig00001229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57238

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216--452	42	5.8	41	89	8	340	34	25	21	18	1.96
3383--3411	11	2.7	11	94	5	51	51	13	6	27	1.66
6306--6413	24	4.5	24	91	0	171	24	14	21	39	1.91
7483--7516	18	1.9	18	88	5	52	55	5	14	23	1.61
10589--10647	30	2.0	30	86	6	84	38	20	6	33	1.79
11340--11402	31	2.0	31	96	0	117	36	38	1	23	1.65
16881--16941	12	5.1	12	80	7	70	24	11	24	39	1.88
16935--16974	21	1.9	21	89	0	62	27	22	25	25	2.00
17759--17796	15	2.5	15	95	0	67	23	13	26	36	1.91
23645--23679	2	18.0	2	94	5	63	48	0	0	51	1.00
25323--25353	15	2.0	16	93	6	55	0	16	0	83	0.64
37807--37840	11	2.9	12	91	8	61	26	14	26	32	1.95
38142--38534	81	4.9	81	90	0	606	34	10	22	32	1.88
38142--39349	162	7.3	162	85	3	1588	35	10	21	32	1.88
38517--38553	18	2.1	18	100	0	74	35	16	21	27	1.94
38440--38631	99	1.9	99	91	0	312	34	12	20	32	1.90
38535--39349	81	10.1	81	88	0	1126	35	10	21	32	1.88
40345--41136	134	5.9	134	81	2	853	29	14	21	33	1.94
42891--42989	9	10.8	9	72	20	55	3	20	0	76	0.91
42893--42989	14	7.4	14	70	17	66	3	19	0	77	0.90
42893--42989	18	5.3	17	74	17	70	3	19	0	77	0.90
44670--44718	22	2.2	22	100	0	98	30	18	16	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44965--44997	10	3.4	10	87	8	50	57	3	21	18	1.53
54011--54133	42	3.0	42	77	3	133	26	21	21	30	1.98
53629--54530	259	3.5	258	87	2	1246	34	14	15	34	1.88
54387--54706	176	1.8	173	89	3	498	38	11	14	35	1.82
55174--55252	2	40.5	2	94	5	144	50	0	0	49	1.00
55174--55252	31	2.5	31	100	0	158	50	0	0	49	1.00

Tables:   1

The End!