genome.fa.s6330.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006330.1 Hibiscus syriacus cultivar Beakdansim tig00015129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75996

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9600--9632	12	2.8	12	86	13	50	60	0	39	0	0.97
11144--11394	135	1.9	135	89	1	396	32	15	23	29	1.95
18401--18439	2	19.5	2	100	0	78	51	0	48	0	1.00
27119--27211	21	4.5	21	78	4	100	39	18	24	17	1.91
27119--27211	41	2.3	41	100	0	186	39	18	24	17	1.91
27138--27272	41	3.3	41	82	6	132	38	20	21	19	1.94
27200--27294	20	4.7	20	80	2	91	34	24	17	23	1.96
27482--27525	22	2.0	22	95	0	79	20	45	15	18	1.85
27789--27826	20	1.9	20	88	0	58	13	15	21	50	1.78
28040--28196	21	7.8	20	72	7	84	38	24	17	19	1.93
28165--28373	20	10.4	20	82	4	224	36	25	18	20	1.95
29066--29112	24	2.0	24	87	8	69	25	14	21	38	1.92
29287--29311	12	2.1	12	100	0	50	72	0	28	0	0.86
31608--31735	33	3.7	33	71	18	116	46	17	20	14	1.83
31608--31735	53	2.4	52	93	3	213	46	17	20	14	1.83
31608--31763	19	8.7	19	81	14	197	45	17	21	16	1.85
31755--31869	53	2.2	53	96	1	214	13	22	18	45	1.85
31772--31869	19	5.4	19	82	13	134	14	21	17	46	1.83
31975--32011	14	2.6	14	91	0	65	45	21	0	32	1.52
33931--34103	19	9.6	19	78	12	159	45	23	20	10	1.81
34025--34081	14	3.7	14	75	20	51	43	22	22	10	1.84
34006--34098	33	2.8	33	95	0	168	46	21	21	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33965--34103	52	2.7	52	74	8	147	46	23	21	9	1.80
34099--34190	19	5.4	17	69	24	61	9	16	28	45	1.79
34099--34222	33	3.7	33	88	3	169	10	16	27	45	1.80
34148--34204	14	3.7	14	72	20	51	8	22	24	43	1.81
34319--34634	93	3.4	93	97	0	605	45	18	13	22	1.85
34485--34517	17	1.9	17	88	11	50	45	15	15	24	1.84
36308--36372	21	3.1	21	80	4	87	47	13	26	12	1.78
36414--36469	14	3.7	14	78	17	67	8	25	23	42	1.82
36398--36476	32	2.4	33	91	4	133	8	21	22	46	1.79
36457--36529	21	3.5	21	78	9	87	15	20	17	46	1.84
36609--36679	33	2.2	33	94	0	124	47	16	23	11	1.79
37054--37246	20	9.6	20	85	5	246	18	19	27	34	1.95
38648--38692	18	2.5	18	88	0	72	26	44	15	13	1.83
39174--39229	20	2.8	20	81	2	69	39	21	23	16	1.92
39218--39275	14	3.9	14	79	16	71	48	25	17	8	1.75
39202--39292	32	2.8	33	94	3	166	47	23	18	10	1.80
39182--39297	19	6.6	19	70	21	83	43	23	21	12	1.86
39309--39366	14	3.9	14	79	16	71	8	17	25	48	1.75
39304--39382	32	2.4	33	95	2	142	10	18	24	46	1.80
39323--39440	20	6.4	19	77	11	95	13	20	24	41	1.88
41407--41443	19	1.9	19	94	0	65	32	24	24	18	1.97
41409--41458	19	2.6	19	87	0	64	38	22	24	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42462--42515	24	2.2	24	90	0	81	24	16	20	38	1.92
42690--42714	12	2.1	12	100	0	50	72	0	28	0	0.86
45001--45127	33	3.8	33	86	4	184	43	18	22	14	1.87
45002--45134	66	2.0	66	94	0	230	42	18	22	16	1.89
45127--45169	20	2.2	20	87	4	61	16	18	23	41	1.89
45155--45188	14	2.4	14	85	0	50	8	23	20	47	1.78
45310--45346	14	2.6	14	91	0	65	45	24	0	29	1.53
46692--46758	21	3.2	21	68	4	55	19	20	35	23	1.95
46692--46814	42	2.9	41	80	7	113	22	17	36	22	1.95
57895--57925	14	2.2	14	94	0	53	58	25	12	3	1.50
57892--57972	24	3.4	24	80	11	87	56	20	12	9	1.64
58296--58398	40	2.6	40	96	0	188	29	14	12	43	1.82
62607--62690	39	2.2	39	100	0	168	42	17	11	27	1.84

Tables:   1

The End!