genome.fa.s6332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006332.1 Hibiscus syriacus cultivar Beakdansim tig00015137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82543

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662--1960	98	3.0	99	89	4	458	28	26	18	27	1.98
2366--2418	25	2.1	25	92	0	88	47	15	0	37	1.45
7951--7979	15	1.9	15	100	0	58	20	34	13	31	1.92
16092--16152	21	3.2	21	63	29	55	32	4	19	42	1.73
16084--16203	35	3.3	36	89	5	181	30	5	20	43	1.73
19195--19269	23	3.3	23	74	3	73	30	21	22	25	1.99
19279--19496	103	2.1	103	96	0	400	37	23	13	25	1.91
25059--25133	23	3.3	23	74	3	73	30	21	22	25	1.99
25143--25360	103	2.1	103	96	0	400	37	23	13	25	1.91
26841--26865	2	12.5	2	100	0	50	52	0	0	48	1.00
29404--29488	37	2.3	37	90	6	129	31	4	21	42	1.73
32741--32782	22	1.9	22	95	0	75	30	0	2	66	1.04
32914--32952	19	2.1	18	90	4	60	58	2	0	38	1.12
34618--34690	14	5.4	13	75	18	69	46	0	9	43	1.36
34622--34692	13	5.3	12	81	18	79	47	0	9	42	1.36
34618--34692	27	2.8	27	95	0	132	48	0	9	42	1.35
34742--34942	101	2.0	102	90	2	314	44	10	5	39	1.63
35126--35168	22	2.0	22	86	9	61	23	20	25	30	1.99
37757--37796	16	2.5	16	100	0	80	50	30	15	5	1.65
41326--41480	21	7.4	20	89	3	177	40	20	22	16	1.92
41326--41479	63	2.5	63	87	5	206	40	20	22	16	1.91
45387--45474	2	44.0	2	97	0	167	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47890--47972	8	10.1	8	85	12	107	75	0	13	10	1.04
47890--47978	25	3.6	26	81	15	118	76	0	12	11	1.02
47890--47972	17	5.1	17	81	15	104	75	0	13	10	1.04
47893--47993	8	12.5	8	74	12	64	78	1	9	9	1.05
49240--49311	37	1.9	37	81	10	85	40	18	20	20	1.92
49321--50098	54	14.7	53	91	6	1231	30	18	26	24	1.98
49321--50090	212	3.6	212	98	0	1479	30	18	25	25	1.98
51002--51041	16	2.5	16	100	0	80	50	30	15	5	1.65
57183--57224	16	2.5	17	88	3	59	40	7	2	50	1.43
59221--59245	12	2.1	12	100	0	50	32	24	0	44	1.54
60915--60967	27	2.0	27	82	7	65	41	0	5	52	1.25
61167--61218	27	1.9	27	84	7	70	40	0	1	57	1.10
66039--66194	31	5.0	31	92	1	251	37	21	19	21	1.95
67059--67103	21	2.1	21	84	8	56	15	22	28	33	1.95
67846--67916	24	3.0	24	82	0	88	14	36	18	30	1.90
67852--67913	15	4.1	15	80	0	79	12	35	19	32	1.90
67855--67916	3	20.7	3	79	0	52	11	35	20	32	1.88
69951--69991	18	2.3	18	91	4	66	63	2	4	29	1.28
71128--71202	38	2.0	37	84	5	98	49	4	0	46	1.20
72475--72518	22	2.0	22	86	0	61	47	0	0	52	1.00
72475--72535	21	2.9	21	76	11	52	42	0	1	55	1.09
73102--73158	28	2.0	28	96	0	105	29	7	15	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80638--80666	3	9.7	3	100	0	58	65	0	0	34	0.93
81332--81456	60	2.1	60	81	3	144	32	17	17	32	1.94
81552--81579	14	2.0	14	100	0	56	42	0	0	57	0.99

Tables:   1

The End!