genome.fa.s6333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006333.1 Hibiscus syriacus cultivar Beakdansim tig00015138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105520

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60--107	21	2.3	20	82	10	53	45	4	0	50	1.21
168--951	404	1.9	401	82	9	963	45	7	8	38	1.63
1443--1477	15	2.3	15	90	0	52	51	5	8	34	1.56
1451--1482	15	2.1	15	94	0	55	46	6	9	37	1.61
11783--11827	16	2.9	16	83	9	67	17	20	11	51	1.75
15012--15044	17	2.0	17	88	5	50	33	42	3	21	1.68
19307--19716	198	2.1	198	99	0	802	32	23	20	23	1.98
20618--20714	33	2.9	33	89	0	149	38	12	15	34	1.85
23132--23156	3	8.3	3	100	0	50	68	32	0	0	0.90
26701--26748	25	1.9	25	87	8	71	56	2	2	39	1.23
28602--28652	20	2.6	19	79	14	59	31	1	19	47	1.61
35965--36055	44	2.0	45	87	2	130	53	7	4	34	1.49
35967--36065	44	2.3	44	79	8	121	51	8	4	36	1.50
45439--45489	19	2.7	19	100	0	102	25	27	21	25	1.99
45580--45631	21	2.5	21	81	3	61	38	19	25	17	1.93
45620--45754	20	6.7	20	78	7	112	32	24	18	24	1.97
45617--45748	61	2.2	61	85	0	174	34	24	17	23	1.96
45922--45965	22	2.0	22	90	0	70	22	45	13	18	1.84
46226--46284	20	3.0	20	87	0	73	16	18	22	42	1.89
46421--46475	25	2.2	24	78	15	58	20	9	18	52	1.71
47604--47648	18	2.5	18	88	0	72	26	44	15	13	1.83
48135--48190	20	2.8	21	76	13	64	39	19	23	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48163--48226	19	3.6	19	76	20	84	45	20	20	14	1.85
48238--48295	14	3.9	14	75	16	62	10	15	24	50	1.75
48240--48311	32	2.2	33	95	2	128	12	16	22	48	1.79
48296--48351	20	2.8	19	86	7	76	16	25	23	35	1.94
50340--50378	20	2.0	20	94	0	69	46	30	10	12	1.75
50371--50424	14	3.5	14	75	22	54	46	20	22	11	1.82
50384--50429	14	2.8	17	75	25	53	45	19	21	13	1.84
50419--50471	19	2.8	19	97	0	97	16	20	16	45	1.86
50474--50523	20	2.5	20	96	3	93	16	24	28	32	1.96
51744--51768	12	2.1	12	100	0	50	72	0	28	0	0.86
54059--54185	33	3.8	33	87	4	193	42	18	22	15	1.89
54060--54192	66	2.0	66	95	0	239	41	18	22	17	1.90
54185--54274	33	2.7	33	92	0	144	13	21	21	44	1.85
54214--54274	19	3.5	19	72	21	69	11	22	21	44	1.84
54200--54256	14	3.7	14	72	20	51	8	22	22	45	1.80
54381--54417	14	2.6	14	91	0	65	45	24	0	29	1.53
55772--55974	42	4.8	41	72	9	158	22	16	36	23	1.94
55802--55977	84	2.1	84	96	0	325	23	15	38	22	1.93
56233--56265	17	1.9	17	88	11	50	45	15	15	24	1.84
56194--56380	91	2.0	90	89	6	286	47	18	11	21	1.81
56547--56677	63	2.1	63	98	0	253	23	36	18	21	1.95
58047--58139	19	5.1	19	76	15	97	46	17	23	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58072--58134	33	1.9	33	100	0	126	46	20	23	9	1.80
58135--58179	19	2.4	19	80	0	54	6	13	26	53	1.64
58731--58783	20	2.7	20	93	0	88	26	20	28	24	1.99
58792--58845	20	2.7	20	91	0	90	25	16	24	33	1.96
58732--58848	61	1.9	61	83	0	153	23	17	24	34	1.96
58732--58866	61	2.2	61	80	2	146	22	19	24	33	1.97
71659--71719	30	2.0	30	84	6	79	47	0	1	50	1.10
75749--75786	18	2.2	18	90	4	60	65	0	0	34	0.93
77047--77082	2	18.0	2	100	0	72	50	0	0	50	1.00
84754--84814	27	2.3	27	85	0	77	31	14	39	14	1.87
84767--84824	27	2.1	27	96	0	107	27	17	36	18	1.94
86514--86554	18	2.3	18	87	4	57	63	4	4	26	1.35
86595--86625	10	3.1	10	95	0	53	32	0	32	35	1.58
97388--97543	56	2.8	56	93	1	262	42	12	10	34	1.77
97388--97566	56	3.3	55	86	4	220	41	13	11	32	1.81
99749--99779	2	15.5	2	100	0	62	48	0	0	51	1.00
102847--103492	182	3.6	179	86	3	809	43	11	16	28	1.84

Tables:   1

The End!