genome.fa.s6334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006334.1 Hibiscus syriacus cultivar Beakdansim tig00015139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159903

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6580--6626	19	2.5	19	89	3	69	68	6	19	6	1.34
7110--7149	17	2.4	17	91	0	62	5	7	12	75	1.18
9280--9327	3	16.7	3	81	16	57	35	0	0	64	0.94
9764--9821	29	2.0	28	87	9	82	60	25	12	1	1.41
11475--11541	28	2.5	26	80	9	64	34	4	2	58	1.34
14840--14871	15	2.1	15	94	0	55	25	18	9	46	1.79
22609--22643	18	1.9	18	100	0	70	31	5	5	57	1.46
23802--24360	113	5.0	113	96	0	1023	37	13	18	30	1.89
24686--24740	3	18.7	3	78	10	51	36	0	0	63	0.95
26943--26972	14	2.2	14	94	5	53	46	0	10	43	1.37
30577--30632	28	2.0	27	93	3	94	50	16	7	26	1.70
31057--31133	39	2.0	39	94	0	136	37	18	10	33	1.85
33877--34179	143	2.1	140	85	3	408	33	13	18	34	1.90
35841--35900	21	3.0	20	85	11	88	25	28	21	25	1.99
38176--39181	4	254.5	4	95	2	1621	21	25	0	52	1.48
39060--39089	3	9.7	3	92	7	51	0	30	0	70	0.88
39163--39346	4	47.2	4	81	14	201	3	26	0	70	1.02
39251--39356	3	33.0	3	76	17	83	2	28	0	68	1.03
38855--39356	32	17.0	29	79	11	231	10	26	0	62	1.29
40876--40917	16	2.6	16	88	0	57	2	52	0	45	1.13
42264--42346	29	2.8	29	92	1	139	43	9	14	32	1.78
45710--45739	15	2.0	15	93	0	51	20	0	23	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46890--46972	29	2.8	29	88	1	130	43	10	14	31	1.80
50722--50760	19	2.0	20	90	9	64	33	0	10	56	1.33
50941--50978	14	2.6	15	79	8	51	60	0	2	36	1.11
54618--54642	10	2.5	10	100	0	50	32	36	0	32	1.58
54671--54716	18	2.6	17	80	10	56	32	6	2	58	1.36
56659--56735	41	1.9	40	84	7	102	22	29	31	16	1.96
57842--57885	22	2.0	22	100	0	88	54	18	9	18	1.69
58520--58603	5	17.0	5	97	2	161	39	0	0	60	0.97
58805--58850	21	2.1	21	84	8	56	45	2	6	45	1.41
63027--63135	39	2.8	39	82	0	146	30	46	7	15	1.73
63099--63413	165	1.9	165	93	0	540	27	30	16	24	1.96
65512--65544	2	16.5	2	100	0	66	51	0	0	48	1.00
66390--66428	18	2.1	19	85	4	53	30	2	5	61	1.31
68776--68881	20	5.3	20	82	10	128	42	24	13	19	1.87
68752--68890	60	2.3	62	75	13	146	40	23	14	21	1.90
68875--68915	19	2.1	20	86	4	57	24	17	14	43	1.86
69034--69091	22	2.6	22	75	0	71	18	37	18	24	1.94
69435--69495	20	3.3	20	68	25	62	49	26	14	9	1.75
69450--69483	14	2.4	14	85	0	50	50	26	14	8	1.72
71657--71749	21	4.4	20	78	8	87	23	31	21	23	1.99
71655--71773	42	2.8	42	84	5	134	21	31	21	24	1.98
73134--73218	43	2.0	42	86	2	116	32	0	16	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73294--73370	20	3.9	19	80	13	84	46	20	16	15	1.84
75924--75977	24	2.2	24	90	0	81	40	18	16	24	1.90
76718--76756	15	2.5	15	83	4	51	66	0	2	30	1.05
76718--76756	16	2.5	15	84	8	51	66	0	2	30	1.05
76912--77086	20	8.9	19	79	12	158	21	14	22	41	1.89
76930--77095	40	4.1	41	80	11	175	19	13	23	43	1.87
76951--77095	20	7.2	20	83	6	159	17	14	24	44	1.86
76951--77123	40	4.3	39	80	13	174	17	14	24	43	1.87
78584--78634	18	2.9	18	72	19	54	31	0	1	66	1.03
80360--80399	21	1.9	21	89	0	62	32	35	15	17	1.91
80360--80407	21	2.3	21	85	0	60	31	31	18	18	1.95
80917--80945	13	2.2	13	100	0	58	27	0	13	58	1.36
80927--80991	20	3.2	20	80	4	76	21	1	9	67	1.27
83291--83536	123	2.0	123	90	1	388	31	8	15	44	1.76
83642--83750	53	2.0	54	87	1	157	28	11	1	57	1.44
83810--83868	18	3.3	18	69	9	57	44	13	10	32	1.77
83808--83880	36	2.0	37	94	2	130	41	15	10	32	1.82
87346--87380	5	7.0	5	87	12	54	17	0	42	40	1.49
87987--88055	34	2.0	34	83	13	88	69	4	5	20	1.27
88760--89001	54	4.5	54	94	0	394	33	17	19	29	1.95
96337--96562	23	11.4	21	63	28	104	32	14	34	17	1.90
96390--96489	16	5.4	16	67	28	56	34	17	33	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96337--96586	39	6.3	39	94	4	439	32	14	35	18	1.91
96511--96571	16	3.4	16	69	26	50	34	18	32	14	1.91
96337--96586	121	2.1	116	94	3	437	32	14	35	18	1.91
96332--96582	82	3.1	82	94	5	451	32	14	36	16	1.89
104900--105125	36	6.2	36	89	1	292	36	23	19	20	1.95
105506--105812	53	5.8	51	82	6	312	32	19	23	23	1.98
105505--105849	56	6.4	53	80	7	342	33	20	22	24	1.97
105496--105849	51	6.6	53	81	7	353	33	19	22	24	1.97
105817--106182	55	6.7	55	87	3	456	31	15	25	28	1.96
105505--105845	104	3.2	110	81	7	283	32	20	22	24	1.98
105505--105909	111	3.8	109	78	11	261	32	19	23	24	1.97
105834--106135	108	2.8	110	88	3	439	31	15	26	27	1.96
105817--106185	163	2.2	164	85	6	498	31	15	25	27	1.96
107454--107592	16	7.4	16	66	29	62	33	16	33	16	1.92
107439--107680	39	6.1	39	95	4	439	32	14	35	17	1.90
107615--107675	16	3.4	16	69	26	50	34	18	32	14	1.91
107434--107687	83	3.1	83	94	5	466	31	14	37	16	1.89
112188--112222	2	18.0	2	94	5	63	51	0	0	48	1.00
114050--114157	51	2.1	52	89	5	166	26	23	14	35	1.94
114050--114157	26	4.2	26	88	7	141	26	23	14	35	1.94
116547--116756	73	2.9	72	82	3	262	36	14	16	32	1.88
116771--116831	29	2.1	29	87	0	86	31	14	8	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120978--121022	18	2.5	18	92	0	81	22	15	40	22	1.91
121021--121265	39	6.3	39	92	0	391	19	30	21	29	1.97
127725--127764	2	20.0	2	100	0	80	50	0	0	50	1.00
129603--129650	21	2.3	21	85	0	69	47	20	0	31	1.50
131270--131300	15	2.1	15	93	0	53	51	0	3	45	1.17
134491--134532	3	14.3	3	82	5	50	35	7	0	57	1.26
143003--143045	21	2.0	21	90	0	68	48	2	13	34	1.56
153790--153832	19	2.2	20	80	12	54	18	13	11	55	1.68

Tables:   1

The End!