genome.fa.s6335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006335.1 Hibiscus syriacus cultivar Beakdansim tig00015142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76761

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734--791	27	2.1	27	96	0	107	27	17	36	18	1.94
2447--2497	17	2.8	17	80	11	57	62	3	3	29	1.31
2447--2487	18	2.4	17	87	4	55	63	4	4	26	1.35
2804--2862	29	2.0	29	83	6	75	35	11	23	28	1.91
13250--13407	56	2.8	56	95	0	280	42	12	10	34	1.77
15599--15627	2	14.5	2	100	0	58	48	0	0	51	1.00
18704--19356	182	3.6	181	86	1	853	42	12	16	27	1.84
20822--21353	201	2.6	205	79	6	677	37	17	14	30	1.90
20993--21740	198	3.8	189	75	12	618	38	16	14	31	1.89
21569--21614	21	2.1	21	84	4	56	30	15	10	43	1.81
21428--21812	198	1.9	202	85	3	537	38	16	13	31	1.87
25056--25108	21	2.5	21	90	0	88	41	9	13	35	1.76
25398--25560	87	1.9	87	90	0	263	30	15	11	42	1.81
34381--34422	2	21.0	2	90	0	66	50	4	0	45	1.23
38017--38042	2	13.0	2	100	0	52	50	0	0	50	1.00
40009--40065	28	2.0	28	100	0	114	42	10	22	24	1.85
40849--40998	75	2.0	75	98	0	291	26	22	20	31	1.98
44799--44846	20	2.4	20	100	0	96	22	4	25	47	1.69
46349--46425	37	2.1	37	85	4	102	48	1	3	46	1.28
49020--49073	2	27.0	2	96	0	99	0	51	0	48	1.00
51148--51201	28	1.9	28	88	0	81	27	14	22	35	1.93
55180--55218	18	2.2	18	90	0	60	38	35	7	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67383--67416	18	1.9	17	88	5	50	44	0	14	41	1.45
70371--70466	26	3.5	26	71	25	90	56	9	13	20	1.65
70367--70475	56	2.0	56	89	7	172	55	11	13	20	1.68
75459--75494	15	2.4	15	90	9	56	52	0	2	44	1.15
75462--75533	22	3.2	22	72	16	58	54	0	4	41	1.20

Tables:   1

The End!