genome.fa.s6336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006336.1 Hibiscus syriacus cultivar Beakdansim tig00015144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  363990

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232--381	64	2.4	62	82	7	180	30	24	16	28	1.96
6160--6216	23	2.6	21	73	10	60	28	28	22	21	1.99
7743--7786	21	2.1	21	83	8	54	9	34	15	40	1.79
8312--8342	2	15.5	2	100	0	62	48	0	0	51	1.00
10213--10250	20	1.9	20	88	0	58	73	2	13	10	1.19
10477--10522	19	2.4	19	85	7	58	54	4	10	30	1.55
12695--12734	13	3.0	13	82	7	53	60	0	2	37	1.11
19272--19375	52	2.0	52	96	0	190	40	15	23	21	1.91
19306--19454	74	2.0	74	97	0	280	41	14	19	24	1.88
23930--23968	10	3.7	10	80	12	51	48	15	2	33	1.58
29800--29836	20	1.9	19	89	10	58	45	10	24	18	1.81
30548--30616	3	23.0	3	100	0	138	66	0	0	33	0.92
30639--30672	17	2.0	17	94	0	59	0	20	2	76	0.92
36959--37004	23	2.0	23	91	0	74	30	13	15	41	1.85
40867--40900	16	2.1	17	88	5	52	44	20	0	35	1.52
42570--42617	19	2.5	19	93	0	87	25	25	27	22	2.00
49434--49463	15	2.0	15	93	0	51	30	13	13	43	1.82
49599--49647	25	1.9	26	87	4	73	36	20	10	32	1.86
52348--52446	21	4.7	21	76	5	65	34	21	15	29	1.94
54602--54650	21	2.3	21	96	0	89	36	14	10	38	1.80
55951--55984	10	3.5	10	88	4	52	91	5	0	2	0.51
60825--60918	31	3.1	30	75	4	89	30	23	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67286--67318	14	2.4	14	90	10	50	78	0	21	0	0.75
70055--70084	13	2.4	13	94	5	53	43	0	30	26	1.55
76948--77000	24	2.2	24	81	12	65	60	11	15	13	1.59
78873--78927	23	2.3	25	84	6	78	60	12	18	9	1.58
81604--81656	24	2.2	24	84	12	74	58	13	15	13	1.64
83526--83580	23	2.3	25	84	6	78	60	12	16	10	1.60
91654--91713	30	2.0	31	86	3	86	28	8	10	53	1.63
92602--92653	21	2.6	21	90	6	81	34	13	5	46	1.67
93066--93105	19	2.0	20	90	4	64	20	15	0	65	1.28
93374--93441	18	3.9	18	76	17	63	73	1	19	5	1.11
96744--96795	21	2.6	19	87	6	68	36	13	3	46	1.62
97207--97246	19	2.0	20	90	4	64	20	15	0	65	1.28
99207--99244	15	2.5	15	83	8	51	55	0	23	21	1.44
99838--99877	21	1.9	21	85	10	55	62	0	17	20	1.33
99900--99940	22	1.9	21	90	5	64	26	2	36	34	1.70
101190--101227	2	19.5	2	89	5	60	50	0	2	47	1.15
103007--103047	22	1.9	21	90	5	64	34	36	2	26	1.70
109467--109509	23	1.9	21	81	13	50	32	18	13	34	1.90
113213--113254	22	2.0	21	90	4	66	33	35	2	28	1.70
119151--119181	11	2.8	11	90	0	53	87	0	12	0	0.55
119151--119184	6	6.0	6	86	13	54	85	0	14	0	0.60
130431--130693	133	2.0	133	98	0	508	41	10	14	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132355--132405	20	2.6	20	90	3	77	37	13	5	43	1.69
132818--132857	19	2.0	20	90	4	64	20	15	0	65	1.28
152537--152576	2	20.0	2	100	0	80	50	0	0	50	1.00
153959--153988	14	2.1	14	100	0	60	23	26	16	33	1.96
156972--157015	21	2.0	22	82	4	54	34	4	22	38	1.75
158816--158863	18	2.6	18	81	18	62	8	14	4	72	1.23
158819--158863	19	2.4	19	85	10	65	8	13	4	73	1.23
178183--178267	43	2.0	43	97	2	163	31	14	23	30	1.94
181269--181319	20	2.6	20	87	3	68	33	15	7	43	1.76
182197--182276	35	2.2	37	88	4	119	30	38	3	27	1.74
184319--184423	36	2.9	36	91	1	158	29	34	4	31	1.78
184340--184404	13	5.2	13	73	17	66	32	32	3	32	1.73
187677--187716	20	1.9	20	85	10	53	32	7	32	27	1.85
193100--193139	20	1.9	20	85	10	53	32	7	32	27	1.85
201770--201855	11	7.3	11	72	22	68	31	36	3	29	1.74
201767--201871	36	2.9	36	92	1	167	29	35	4	30	1.78
207966--207999	8	4.0	8	85	14	50	82	11	5	0	0.83
207966--208015	9	5.6	9	78	0	55	76	16	8	0	1.02
207966--208008	18	2.4	18	96	0	77	79	13	6	0	0.93
214825--214904	35	2.2	37	88	4	119	30	38	3	27	1.74
215470--215533	26	2.5	27	85	12	82	7	17	3	71	1.22
219501--219555	23	2.3	25	81	6	69	61	12	16	9	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219514--219561	25	2.0	23	84	8	60	62	12	16	8	1.53
219553--219594	5	8.6	5	94	5	77	80	0	19	0	0.70
222227--222256	13	2.4	13	94	5	53	43	0	30	26	1.55
228883--229056	23	7.3	23	69	25	98	31	36	3	28	1.74
228883--229056	11	14.7	11	71	23	115	31	36	3	28	1.74
228880--229056	36	4.9	36	95	0	311	31	36	3	28	1.76
243193--243289	13	8.0	12	70	25	62	30	36	2	30	1.69
243135--243308	36	4.9	36	88	4	266	31	35	3	29	1.74
247723--247760	19	2.0	19	100	0	76	15	21	42	21	1.89
252228--252265	19	2.0	19	100	0	76	15	21	42	21	1.89
259201--259243	23	1.9	21	81	13	50	34	13	18	32	1.90
263799--263844	19	2.4	19	96	0	83	21	15	28	34	1.94
268040--268107	35	1.9	36	93	3	120	29	2	36	30	1.72
273120--273169	24	2.0	25	85	11	68	64	0	24	12	1.27
273390--273434	22	2.0	22	86	0	63	0	13	6	80	0.91
281789--281863	26	3.0	26	75	16	77	64	0	18	17	1.30
288214--288253	21	1.9	21	85	10	55	62	0	17	20	1.33
288276--288316	22	1.9	21	90	5	64	26	2	36	34	1.70
290863--290942	35	2.2	37	86	4	110	30	37	3	28	1.75
296543--296622	35	2.2	37	88	4	119	30	38	3	27	1.74
302299--302361	19	3.3	19	84	6	83	0	4	11	84	0.77
303817--303860	21	2.2	21	92	8	74	47	6	11	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305692--305741	24	2.0	24	84	3	64	26	20	14	40	1.90
307013--307047	8	4.6	8	86	13	56	0	22	0	77	0.78
307007--307070	14	4.6	14	77	16	62	3	18	0	78	0.89
307006--307069	19	3.2	19	79	18	67	3	18	0	78	0.89
307005--307055	22	2.3	20	78	15	57	3	19	0	76	0.94
307783--307831	19	2.4	21	90	6	75	46	8	12	32	1.71
313601--313631	13	2.5	12	90	10	53	3	12	6	77	1.08
317940--317978	14	2.7	14	92	4	60	0	7	7	84	0.77
322262--322303	10	4.3	10	87	6	68	0	7	16	76	1.00
322268--322314	21	2.3	20	92	7	78	0	4	12	82	0.80
322268--322323	11	5.3	11	79	16	55	0	3	12	83	0.76
322268--322323	10	5.5	10	81	12	60	0	3	12	83	0.76
322268--322323	21	2.8	19	75	21	60	0	3	12	83	0.76
325036--325077	21	2.0	22	85	4	59	2	9	16	71	1.23
329658--329690	13	2.7	12	90	9	57	0	15	9	75	1.03
333008--333055	17	2.7	18	90	6	71	33	33	0	33	1.58
333008--333055	19	2.7	18	87	12	73	33	33	0	33	1.58
333042--333075	13	2.7	13	90	4	52	26	29	0	44	1.55
333042--333078	12	3.0	12	88	7	56	27	27	0	45	1.54
333116--333594	242	2.0	238	96	3	890	31	20	15	32	1.94
333496--333693	98	2.0	99	99	1	389	41	17	13	28	1.86
346877--346936	18	3.2	18	77	13	66	3	13	3	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347251--347291	22	1.9	21	90	5	64	26	2	36	34	1.70
351178--351269	35	2.6	35	100	0	184	31	36	5	26	1.79
351188--351269	11	7.1	11	74	20	78	32	36	4	25	1.77
351188--351269	24	3.5	22	76	18	78	32	36	4	25	1.77
361913--361958	22	2.0	24	91	8	78	43	15	8	32	1.77

Tables:   1

The End!