genome.fa.s6338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006338.1 Hibiscus syriacus cultivar Beakdansim tig00015152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149391

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--996	7	146.0	7	91	7	1641	41	43	0	14	1.45
997--1367	7	54.6	7	94	5	638	14	57	27	0	1.41
1931--2012	22	3.7	23	80	6	107	35	12	12	40	1.80
2697--2816	42	2.8	43	82	2	145	25	22	20	30	1.98
3085--3212	42	3.0	42	86	0	175	28	20	20	31	1.97
2927--3167	129	1.9	129	87	1	324	28	19	19	31	1.97
5220--5251	15	2.1	16	94	5	57	37	0	0	62	0.95
5222--5296	27	2.9	25	75	11	71	33	1	0	65	1.01
5367--5391	2	12.5	2	100	0	50	48	0	0	52	1.00
5975--6143	2	90.0	2	70	20	107	55	3	1	40	1.25
5977--6145	64	2.7	62	83	13	215	55	3	1	39	1.25
20757--20929	31	5.6	31	97	0	319	39	22	19	19	1.93
25101--25256	31	5.0	31	92	1	251	39	23	17	19	1.93
27859--27922	25	2.6	24	78	9	67	48	1	17	32	1.56
27873--27922	24	2.1	23	85	7	64	54	0	18	28	1.44
28815--28891	19	4.1	19	81	3	84	41	5	20	32	1.75
28933--28974	19	2.2	19	87	8	59	57	2	19	21	1.52
37550--37593	23	1.9	23	90	9	72	36	9	13	40	1.76
37587--37631	20	2.2	20	96	0	81	33	11	26	28	1.91
43770--44111	139	2.5	136	81	8	370	46	13	12	26	1.80
44701--44936	45	5.2	45	84	0	319	22	20	14	41	1.89
46379--46433	18	2.8	20	83	10	87	29	27	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47599--47624	8	3.2	8	100	0	52	65	0	34	0	0.93
53197--53252	20	2.9	19	81	5	69	28	30	19	21	1.98
56823--56852	6	4.8	6	95	4	51	66	0	3	30	1.07
56906--56988	40	2.1	40	84	8	107	65	3	3	27	1.26
57073--57127	3	19.0	3	80	14	62	69	0	3	27	1.05
58247--58298	3	16.7	3	88	7	77	69	0	1	28	0.99
58297--58561	39	6.8	38	74	18	174	47	5	2	44	1.40
58310--58439	36	3.5	35	81	9	136	48	6	0	44	1.33
58428--58456	2	15.0	2	92	7	51	51	0	0	48	1.00
58441--58496	28	2.0	29	86	10	80	48	3	5	42	1.43
58385--58582	39	4.9	38	76	15	161	47	5	3	43	1.43
58456--58603	39	3.7	38	84	9	163	44	6	4	44	1.49
58390--58649	80	3.2	79	79	14	214	44	5	3	46	1.44
58646--58682	19	1.9	19	88	0	56	70	2	0	27	1.01
62037--62304	43	6.2	43	81	6	204	33	20	21	24	1.97
62017--62268	130	1.9	131	81	7	307	35	19	21	23	1.96
62080--62304	86	2.6	86	86	3	292	34	20	22	23	1.97
64676--64840	80	2.1	79	89	3	251	39	16	12	31	1.86
66983--67071	38	2.3	39	90	5	135	40	19	12	28	1.87
67052--67195	41	3.5	41	88	2	191	33	19	16	30	1.94
74648--74694	17	2.8	17	100	0	94	21	8	6	63	1.44
82287--82334	23	2.1	23	81	14	55	68	16	4	10	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84029--84095	8	7.9	8	78	5	53	68	1	0	29	0.98
84022--84095	3	25.7	3	73	13	66	66	1	0	32	1.00
84212--84508	124	2.4	124	91	0	477	25	17	24	32	1.96
84659--84761	32	3.2	32	63	15	84	15	19	28	36	1.92
84678--84782	34	3.1	34	63	15	92	16	20	24	39	1.92
84642--84796	66	2.3	66	98	0	301	18	19	25	36	1.95
84992--85445	253	1.8	248	86	2	656	24	19	24	32	1.97
91064--91136	3	25.3	3	73	13	64	65	1	1	31	1.09
91064--91137	11	6.7	11	75	14	64	64	1	1	32	1.10
96345--96448	48	2.2	48	85	3	138	35	21	12	30	1.90
99347--99385	17	2.4	17	91	4	62	43	2	5	48	1.38
107636--107676	20	2.0	20	100	0	82	51	9	9	29	1.67
119775--119832	20	2.7	20	81	10	62	31	17	22	29	1.96
120511--120562	26	1.9	28	81	14	65	46	1	21	30	1.62
123721--123764	22	2.0	22	100	0	88	9	36	22	31	1.86
123723--123777	22	2.5	22	88	5	67	5	34	30	29	1.80
124715--124856	64	2.2	65	79	9	150	34	17	23	24	1.96
124863--124926	20	3.0	21	81	11	67	32	20	20	26	1.97
128383--128473	7	13.1	7	78	2	67	23	2	30	43	1.65
128375--128418	13	3.3	13	81	6	52	22	4	34	38	1.75
128387--128431	20	2.2	21	88	4	65	20	4	33	42	1.72
128375--128426	27	1.9	27	92	0	86	21	3	36	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128600--128659	11	5.6	11	71	15	54	41	1	0	56	1.09
129452--129537	39	2.3	37	82	11	95	39	5	8	46	1.58
132164--132192	12	2.3	13	88	11	51	62	0	0	37	0.96
132167--132192	12	2.2	12	100	0	52	61	0	0	38	0.96
132232--132283	19	2.9	18	86	8	70	73	5	3	17	1.19
133068--133119	24	2.1	25	86	10	72	3	21	5	69	1.26
133566--133597	11	2.8	11	95	4	55	43	0	0	56	0.99
133593--133672	3	26.7	3	92	0	124	61	0	1	37	1.04
133991--134770	114	6.9	114	95	0	1233	29	19	12	38	1.89
135513--136082	83	6.9	83	92	1	894	35	21	14	28	1.93
137097--137173	8	10.1	8	77	14	83	0	16	0	83	0.66
137096--137173	22	3.5	22	71	22	72	0	17	0	82	0.68
148387--148418	14	2.3	14	94	0	55	65	0	0	34	0.93
148491--148539	19	2.7	18	87	9	73	73	6	4	16	1.19

Tables:   1

The End!