genome.fa.s6339.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006339.1 Hibiscus syriacus cultivar Beakdansim tig00015153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  234755

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5191--5238	19	2.5	20	90	10	73	33	12	8	45	1.72
5944--6006	19	3.2	20	80	13	76	77	0	19	3	0.90
5965--5999	8	4.6	8	86	13	56	77	0	22	0	0.78
5944--6001	14	4.3	13	79	14	64	77	0	18	3	0.91
8281--8317	17	2.1	18	90	5	58	37	18	5	37	1.74
9129--9172	21	2.2	21	92	8	74	34	11	6	47	1.66
10631--10656	10	2.6	10	100	0	52	92	0	0	7	0.39
16351--16430	35	2.2	37	88	4	119	27	3	38	30	1.74
22036--22115	35	2.2	37	86	4	110	28	3	37	30	1.75
24649--24689	22	1.9	21	90	5	64	34	36	2	26	1.70
33310--33357	11	4.4	11	79	10	53	2	10	10	77	1.09
33330--33379	24	2.2	22	85	7	64	2	6	6	86	0.79
33334--33376	15	2.9	14	89	10	59	2	6	6	83	0.88
33317--33361	20	2.2	22	88	11	69	2	8	6	82	0.93
36822--36896	26	3.0	26	75	16	77	17	18	0	64	1.30
37743--37781	10	3.7	10	83	10	51	25	7	43	23	1.80
44811--44878	35	1.9	36	87	3	102	30	32	4	32	1.78
45249--45295	23	2.1	21	84	7	58	80	6	12	0	0.88
45257--45295	20	2.0	20	85	10	53	82	5	12	0	0.83
45326--45374	24	2.1	24	84	3	64	71	6	18	4	1.23
45516--45565	24	2.0	25	85	11	68	12	22	0	66	1.24
46806--46843	19	2.0	19	100	0	76	15	21	42	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48937--49033	13	8.0	12	70	25	62	30	36	3	29	1.73
48879--49052	36	4.9	36	90	4	284	30	35	4	29	1.78
55198--55240	15	2.9	15	82	6	52	16	9	4	69	1.31
57161--57228	35	1.9	36	90	3	111	29	36	4	29	1.77
61440--61485	19	2.4	19	96	0	83	34	28	15	21	1.94
71979--72043	13	5.4	12	75	21	57	29	3	35	32	1.73
71961--72062	36	2.9	36	95	1	179	28	3	36	31	1.75
72031--72082	23	2.3	23	96	0	95	30	3	34	30	1.76
71995--72118	56	2.2	59	94	4	218	29	4	35	30	1.78
75304--75356	16	3.2	16	77	17	56	66	0	18	15	1.26
83490--83557	35	1.9	36	93	3	120	29	2	36	30	1.72
83897--83947	19	2.6	20	87	3	68	45	5	15	33	1.71
90192--90221	13	2.4	13	94	5	53	26	30	0	43	1.55
94965--95015	21	2.4	22	93	3	86	0	7	11	80	0.90
98610--98646	5	7.6	5	96	3	67	0	18	0	81	0.70
98639--98698	23	2.5	25	81	5	70	8	16	11	63	1.51
104827--104866	19	2.0	20	86	13	57	62	0	12	25	1.30
108393--108456	26	2.5	26	82	12	78	70	3	18	7	1.25
115911--115952	18	2.3	19	87	4	59	0	7	14	78	0.95
116797--116846	22	2.3	20	83	10	55	50	16	4	30	1.63
130814--130865	22	2.3	23	90	3	79	30	3	34	30	1.76
130831--130902	11	6.2	11	72	22	58	27	4	36	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130834--130905	36	2.0	36	100	0	144	27	5	36	30	1.80
132947--133026	35	2.2	37	88	4	119	27	3	38	30	1.74
156514--156547	17	1.9	18	88	5	52	29	38	0	32	1.58
159499--159523	12	2.1	12	100	0	50	84	0	0	16	0.63
159500--159540	19	2.2	19	91	4	66	82	0	2	14	0.76
163117--163154	2	19.0	2	100	0	76	50	0	0	50	1.00
167906--167939	17	2.1	15	89	10	50	29	26	0	44	1.55
175598--175631	2	17.5	2	87	6	52	47	2	0	50	1.16
176688--176727	19	2.0	20	90	4	64	65	0	15	20	1.28
177140--177190	19	2.6	20	90	3	77	43	5	13	37	1.69
180460--180531	34	2.2	32	85	11	94	5	16	4	73	1.18
181222--181260	20	2.0	20	100	0	78	35	5	10	48	1.59
181224--181274	19	2.6	20	87	3	68	41	5	13	39	1.69
182938--183200	133	2.0	133	99	0	517	33	14	10	41	1.80
184746--184771	10	2.6	10	100	0	52	73	0	26	0	0.84
188956--189028	13	5.8	12	73	23	53	73	4	16	5	1.17
191673--191712	21	1.9	21	85	10	55	62	0	17	20	1.33
191734--191775	22	2.0	21	90	4	66	28	2	35	33	1.70
197113--197155	23	1.9	21	81	13	50	34	13	18	32	1.90
201361--201411	20	2.6	20	90	3	77	35	15	5	43	1.71
205527--205577	20	2.6	20	90	3	77	35	15	5	43	1.71
209684--209733	19	2.6	19	84	12	66	36	16	6	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209684--209731	20	2.5	19	89	3	69	35	14	6	43	1.71
213773--213813	22	1.9	21	90	5	64	26	2	36	34	1.70
215596--215639	2	22.5	2	90	4	72	47	2	0	50	1.13
216889--216929	22	1.9	21	90	5	64	34	36	2	26	1.70
219580--219626	19	2.6	18	83	12	60	65	0	14	19	1.26
220032--220083	19	2.6	21	87	6	72	46	3	13	36	1.62
222316--222382	19	3.8	18	78	16	61	5	17	1	74	1.09
222648--222694	19	2.6	18	83	12	60	65	0	14	19	1.26
223101--223152	19	2.6	21	90	6	81	46	5	13	34	1.67
224863--224902	21	1.9	21	85	10	55	45	17	12	25	1.83
232145--232189	22	2.0	22	91	0	72	11	15	15	57	1.64

Tables:   1

The End!