genome.fa.s6340.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006340.1 Hibiscus syriacus cultivar Beakdansim tig00015154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79500

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1988--2014	14	1.9	14	100	0	54	62	14	7	14	1.51
2027--2080	23	2.3	23	96	0	99	35	29	18	16	1.93
3056--3135	30	2.9	27	76	10	70	17	8	56	17	1.65
3083--3195	15	7.5	15	71	0	82	19	7	58	15	1.59
3074--3155	30	2.7	30	82	0	83	19	6	57	17	1.60
3092--3198	45	2.4	45	90	0	160	20	6	58	14	1.57
3135--3233	33	3.1	32	76	9	105	20	7	59	13	1.57
7640--7772	23	5.8	23	95	0	221	35	9	18	36	1.83
7807--7855	23	2.1	23	84	0	62	36	12	16	34	1.86
7816--7866	23	2.2	23	85	0	66	35	11	19	33	1.88
7565--7942	87	4.3	86	77	10	417	39	11	16	32	1.85
7894--7966	23	3.2	23	92	0	110	36	15	17	30	1.91
8270--8389	14	8.6	14	67	13	52	48	0	1	49	1.17
8314--8397	31	2.7	32	79	13	88	50	1	1	47	1.16
9134--9180	16	3.0	16	75	12	53	48	0	0	51	1.00
9109--9183	30	2.5	30	80	8	82	50	0	1	48	1.09
9277--9950	198	3.4	196	89	2	947	39	14	15	30	1.87
10004--10054	23	2.2	23	92	0	84	33	21	7	37	1.82
10993--11031	15	2.6	15	83	0	51	66	2	2	28	1.18
25573--25718	73	2.0	73	97	0	274	57	9	4	28	1.49
25588--25700	36	3.1	35	62	16	86	55	9	4	30	1.52
32818--32865	22	2.1	24	88	7	73	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33801--34092	82	3.5	82	82	6	365	26	18	19	35	1.94
33670--34092	41	10.3	41	76	10	294	27	16	19	36	1.93
33801--34106	166	1.8	166	85	4	429	27	18	18	34	1.95
37036--37190	42	3.6	44	84	5	210	25	21	19	34	1.96
38613--38652	2	21.0	2	85	10	57	52	0	0	47	1.00
38998--39041	2	22.0	2	100	0	88	50	0	0	50	1.00
39597--39638	20	2.1	20	82	8	50	76	0	4	19	0.96
40916--40980	3	21.7	3	78	12	71	64	0	4	30	1.14
40920--40977	19	3.1	19	78	7	66	63	0	5	31	1.16
40915--40983	22	3.2	22	78	10	81	65	0	4	30	1.12
41019--41128	32	3.5	30	81	9	123	50	5	0	42	1.31
41117--41335	40	5.6	38	78	10	228	44	4	4	46	1.43
41100--41334	78	3.0	76	82	12	271	44	4	3	46	1.42
41101--41346	40	6.4	36	78	15	173	43	4	4	47	1.43
41983--42824	84	10.2	81	77	8	804	24	20	24	30	1.99
41980--42824	249	3.4	247	79	6	1017	24	20	24	30	1.99
41983--42824	165	5.1	165	90	1	1122	24	20	24	30	1.99
46217--46261	19	2.4	19	85	3	65	64	11	13	11	1.50
49283--49347	3	21.7	3	78	12	71	64	0	4	30	1.14
49287--49344	19	3.1	19	78	7	66	63	0	5	31	1.16
49282--49350	22	3.2	22	78	10	81	65	0	4	30	1.12
49388--49497	32	3.5	30	81	9	123	50	5	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49470--49716	40	6.4	39	79	11	244	44	4	3	46	1.42
61584--61630	23	2.0	23	83	0	58	14	23	12	48	1.78
62936--62965	3	9.7	3	92	7	51	0	33	0	66	0.92
65732--65770	19	2.1	19	90	4	62	48	2	0	48	1.15
65814--65868	18	2.9	19	76	12	60	50	1	3	43	1.30
67500--67616	60	1.9	61	91	1	191	49	7	5	37	1.54
69050--69204	61	2.6	60	84	2	211	32	23	4	39	1.75
69369--69486	60	2.0	60	84	5	157	43	5	22	29	1.74
71826--71853	12	2.3	12	100	0	56	21	0	35	42	1.53
76496--76525	9	3.3	9	90	0	51	20	13	0	66	1.24
76809--76881	31	2.4	31	83	0	92	50	16	9	23	1.74

Tables:   1

The End!