Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006342.1 Hibiscus syriacus cultivar Beakdansim tig00015159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72222

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
699--735
15
2.5
15
100
0
74
37
29
16
16
1.90
2274--2418
3
49.0
3
86
5
206
34
2
0
63
1.06
15163--15240
6
13.2
6
74
20
67
83
0
15
1
0.72
15162--15237
28
2.8
28
81
18
106
81
0
17
1
0.76
15163--15240
34
2.3
33
85
12
104
83
0
15
1
0.72
15168--15239
21
3.4
20
81
11
90
83
0
15
1
0.72
15167--15240
35
2.2
34
85
9
98
83
0
14
1
0.71
16396--16712
52
6.1
52
96
1
557
24
15
23
36
1.94
16654--16858
83
2.5
83
94
1
349
28
13
20
36
1.91
17409--18074
113
5.8
113
92
2
1010
37
13
19
29
1.90
18325--18473
3
50.0
3
87
1
219
34
2
0
63
1.06
18960--18989
16
1.9
16
93
6
53
80
3
16
0
0.85
18958--18996
20
1.9
21
89
5
62
76
7
15
0
0.99
21232--21307
38
2.0
38
100
0
152
31
13
28
26
1.93
21832--21867
16
2.3
16
95
4
65
75
0
11
13
1.06
24116--24180
30
2.1
31
88
8
98
40
21
3
35
1.69
26701--26796
49
2.0
49
89
0
147
13
28
38
19
1.90
28854--28898
20
2.2
20
100
0
90
31
8
17
42
1.80
36387--36430
3
15.0
3
85
4
54
59
0
4
36
1.18
36816--36896
42
1.9
43
92
2
137
34
22
20
22
1.97
36482--36990
249
2.0
249
91
1
831
35
17
16
31
1.92
39902--39961
9
6.4
9
76
19
52
1
16
1
80
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39898--39947
21
2.4
22
76
10
59
2
20
2
76
0.99
42412--42461
20
2.5
20
83
0
64
56
10
18
16
1.67
46473--46516
3
15.0
3
85
4
63
61
0
2
36
1.09
46473--46523
9
6.1
8
78
21
52
60
0
1
37
1.08
51331--51359
2
14.5
2
100
0
58
51
0
0
48
1.00
51826--51863
17
2.2
17
95
0
67
23
7
13
55
1.64
57691--57725
15
2.3
15
90
0
52
60
22
2
14
1.48
59302--59514
114
1.9
114
88
2
320
52
6
10
30
1.61
63115--63157
22
2.0
22
86
9
61
23
0
4
72
1.04
63117--63166
25
2.0
25
84
7
66
26
0
4
70
1.05
67017--67066
24
2.1
24
85
7
66
24
2
14
60
1.45

Tables:   1

The End!