Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006344.1 Hibiscus syriacus cultivar Beakdansim tig00015174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60777

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1910--1989
25
3.2
25
94
0
142
32
16
17
33
1.92
2021--2461
65
6.8
65
88
0
621
32
22
15
29
1.95
2827--3053
112
2.1
110
93
2
393
33
21
3
40
1.72
3591--3632
20
2.0
22
86
9
61
35
26
4
33
1.77
13299--13366
20
3.4
20
75
15
68
26
13
17
42
1.86
13889--13990
2
51.5
2
74
9
66
43
5
0
50
1.33
15522--15572
27
2.0
25
81
14
59
11
5
17
64
1.45
29001--29060
23
2.6
23
97
0
111
43
15
25
16
1.86
29001--29081
23
3.7
22
87
8
96
41
16
25
16
1.88
29399--29437
10
4.0
10
86
6
53
64
0
0
35
0.94
29401--29437
19
1.9
19
94
0
65
64
0
0
35
0.94
29387--29438
9
5.3
10
81
11
63
59
1
0
38
1.08
30701--30743
3
14.7
3
81
13
54
37
0
0
62
0.95
32508--32573
2
33.5
2
79
14
66
42
4
3
50
1.38
34852--34894
12
3.2
13
75
18
52
11
20
16
51
1.75
36136--36218
44
1.9
43
83
11
107
75
6
14
3
1.12
37704--38053
124
2.8
124
91
2
553
28
26
19
26
1.99
39491--40282
391
2.0
392
95
2
1415
26
10
10
52
1.68
47560--47597
15
2.5
15
95
0
67
50
13
10
26
1.73
53950--53985
19
1.9
19
88
5
56
33
0
11
55
1.35
54273--54315
20
2.1
21
87
8
63
11
13
4
69
1.33
58644--58689
23
2.0
23
100
0
92
52
4
8
34
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58783--58860
24
3.2
25
78
10
81
25
6
6
61
1.44
58802--58867
25
2.6
25
81
13
82
22
6
4
66
1.32
59391--59498
54
2.0
54
90
0
171
28
10
25
35
1.89

Tables:   1

The End!