genome.fa.s6345.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006345.1 Hibiscus syriacus cultivar Beakdansim tig00015175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144561

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5197--5348	71	2.1	73	93	6	265	45	2	5	46	1.41
5327--5619	86	3.4	85	81	6	317	38	6	3	50	1.47
9488--9557	36	1.9	36	97	0	131	32	25	22	18	1.97
9692--9717	3	8.7	3	100	0	52	65	0	34	0	0.93
20203--20338	30	4.6	29	75	7	123	35	9	3	51	1.52
20205--20329	60	2.1	60	83	5	155	36	10	3	49	1.53
21041--21089	19	2.7	17	84	9	53	26	20	28	24	1.99
21061--21270	65	3.2	64	75	14	198	26	18	24	31	1.97
29784--29943	65	2.5	64	82	8	173	26	18	25	30	1.98
30271--30327	30	1.9	30	89	7	89	40	8	0	50	1.33
30241--30374	60	2.2	60	80	7	148	37	8	0	52	1.38
30281--30338	30	1.9	30	89	6	91	41	8	0	50	1.33
30336--30420	24	3.3	24	73	17	71	37	7	0	55	1.27
30291--30470	30	6.2	29	76	11	136	41	8	0	50	1.34
30361--30420	24	2.5	24	86	5	77	38	8	0	53	1.31
30383--30459	31	2.5	31	91	2	129	40	7	0	51	1.31
30644--30690	18	2.6	18	82	0	67	44	0	14	40	1.46
35862--35928	31	2.2	30	82	12	75	35	11	4	47	1.61
39547--39594	18	2.7	18	76	0	51	37	25	20	16	1.93
41493--41531	13	2.8	13	84	7	51	23	2	2	71	1.10
44161--44355	74	2.7	73	76	4	189	21	23	21	34	1.96
45855--45894	21	1.9	21	85	10	55	27	17	0	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46285--46344	21	3.0	20	83	9	79	28	30	18	23	1.98
51175--51214	21	1.9	21	85	10	55	27	17	0	55	1.43
51608--51660	18	2.9	18	97	0	97	26	33	18	20	1.96
59960--59991	6	5.3	6	100	0	64	84	0	15	0	0.63
60010--60069	29	2.1	29	90	6	97	46	6	0	46	1.29
60042--60140	22	4.5	22	83	12	116	42	9	2	46	1.47
60042--60116	22	3.5	22	90	3	125	42	8	2	46	1.47
60042--60140	43	2.3	43	84	8	139	42	9	2	46	1.47
60649--60872	72	3.1	72	72	3	209	23	25	20	30	1.98
60824--60963	74	1.9	74	88	2	210	17	23	23	35	1.96
70569--70638	33	2.1	34	81	7	81	41	0	7	51	1.29
70585--70647	33	1.9	32	81	9	74	41	1	7	49	1.42
71096--71146	24	2.1	23	79	13	57	50	1	3	43	1.31
71135--71181	20	2.5	19	86	6	60	65	0	2	31	1.04
80003--80069	35	1.9	35	90	0	107	38	28	7	25	1.83
80568--80603	13	2.8	13	95	0	63	44	0	5	50	1.25
81062--81129	27	2.5	28	90	2	102	36	19	11	32	1.88
82370--82403	3	11.3	3	100	0	68	67	0	0	32	0.91
93481--93934	55	8.5	55	79	6	402	29	24	14	31	1.95
93478--93948	106	4.4	106	80	4	484	29	24	14	31	1.95
93959--94109	37	4.1	37	89	3	198	24	17	19	37	1.94
95284--95484	65	3.1	64	77	15	207	32	23	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100925--100979	23	2.5	21	80	11	65	29	27	21	21	1.99
103296--103376	33	2.5	33	100	0	162	35	0	33	30	1.58
103791--103842	19	2.7	19	96	0	95	30	28	17	23	1.97
103810--103952	65	2.2	65	86	8	195	32	22	17	27	1.96
103809--103969	64	2.5	64	78	14	179	30	22	18	28	1.97
105030--105068	17	2.3	17	90	0	60	7	12	0	79	0.93
105113--105166	19	2.8	20	86	5	58	7	14	0	77	0.97
105122--105183	19	3.3	18	86	10	81	6	12	0	80	0.89
105131--105189	19	3.2	19	74	16	52	8	11	0	79	0.93
109204--109233	6	5.2	6	92	8	53	83	0	0	16	0.65
109204--109233	11	2.6	11	94	5	51	83	0	0	16	0.65
111615--111927	30	10.4	30	96	0	554	31	23	21	23	1.98
112179--112203	4	6.2	4	100	0	50	48	24	0	28	1.52
112360--112394	2	18.0	2	94	5	63	51	0	0	48	1.00
112873--112930	20	2.9	20	94	0	98	8	32	34	24	1.86
116331--116733	30	13.4	30	98	0	743	31	23	21	23	1.98
116716--116811	31	3.1	30	74	12	88	32	20	19	27	1.97
130110--130187	23	3.5	23	77	8	90	25	25	24	24	2.00
131826--131909	23	3.7	23	91	0	123	28	26	26	19	1.98
131924--132145	103	2.2	103	91	1	365	37	22	13	26	1.91
133517--133576	20	2.9	21	87	7	95	18	25	25	31	1.97
134465--134507	17	2.6	16	78	7	50	39	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137246--137335	23	3.9	23	89	0	126	26	24	27	21	1.99
137355--137554	103	2.0	101	91	2	328	34	24	14	28	1.93
138931--138990	20	2.9	21	90	7	95	18	25	25	31	1.97
139226--139262	12	3.1	12	96	0	65	43	21	0	35	1.53
140412--140455	21	2.1	21	83	8	54	11	38	13	36	1.81
141638--141686	19	2.6	19	84	9	57	24	28	20	26	1.99

Tables:   1

The End!